Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium328g00002 ATGGGGTGCTCATTCTCTGGTTTGAACGCGCTGTACGATTCCGTTAACAGCGGAGGCGATGCGTGGATCAACGAGAATCGTTTCCGCATCGTGCGCCAGCTCGGAGAAGGTGGCTTCGCCTACGTCTACCTCGTCAAGGAGCTTATCAACGACTCCGCCGCCGGTGGCCTTGCCAAGAAGCTCAAAGACTCCTCTCATCTCTCCGAGGATGGGACTTATGCTATGAAAAAGGTCCTCATTCAGAACAATGAACAGCTGGAGTTGGTCAGGGAGGAGATCCGTGTCTCGTCACTGTTCAATCATCCCAATCTGCTCCCACTTCTTGATCATGCAATTATTTCTGTTAAGCCTACCCAAGAAACGTCTTGGAACCATGAAGCGTACTTGCTGTTTCCAGTTCATATGGATGGAACATTGCTAGACAATGCCAAAGTAATGAAAACCAAGAAGGAATTCTATTCCACCTCAGATGTTCTTCAAATATTTCGTCAGGAATGGGCAGCTGAACACTGCTCTGCACCTTTCCGAGCTCCTGAGCTGTGGGATTGTCCAAGCCAAGCTTCTATAGATGAGAGGACTGACGTTTGGTCACTAGGATGCACATTATATGCAATAATGTATGGGGTATCTCCATTTGAATATGCACTGGGAGAGTCTGGTGGAAGCCTGCAATTGGCTATAGTAAATGCTCAGGTGAAATGGCCAGCTGGACCTAAGCCTCCATATCCAGAAGCTTTTCACCAGTTCGTGTCATGGATGCTTCAGCCCCAGGCTGCTATGAGGCCCCGAATAGATGATATCATCATCCATGTGGATAAGTTGATTGCAAAGTTCACCCAATGA 843 0.4804 MGCSFSGLNALYDSVNSGGDAWINENRFRIVRQLGEGGFAYVYLVKELINDSAAGGLAKKLKDSSHLSEDGTYAMKKVLIQNNEQLELVREEIRVSSLFNHPNLLPLLDHAIISVKPTQETSWNHEAYLLFPVHMDGTLLDNAKVMKTKKEFYSTSDVLQIFRQEWAAEHCSAPFRAPELWDCPSQASIDERTDVWSLGCTLYAIMYGVSPFEYALGESGGSLQLAIVNAQVKWPAGPKPPYPEAFHQFVSWMLQPQAAMRPRIDDIIIHVDKLIAKFTQ 280
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium328g00002 280 PANTHER SERINE/THREONINE-PROTEIN KINASE 16 164 278 - -
Vium328g00002 280 SMART serkin_6 28 275 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium328g00002 280 Gene3D Phosphorylase Kinase; domain 1 12 132 - -
Vium328g00002 280 Gene3D Transferase(Phosphotransferase) domain 1 140 280 - -
Vium328g00002 280 ProSitePatterns Protein kinases ATP-binding region signature. 34 60 IPR017441 GO:0005524
Vium328g00002 280 ProSiteProfiles Protein kinase domain profile. 1 275 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium328g00002 280 Pfam Protein kinase domain 170 270 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium328g00002 280 SUPERFAMILY Protein kinase-like (PK-like) 18 270 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium328g00002 Vium-Chr328 10229 17592 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK NAK Vium328g00002 Pkinase 6.9e-10 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium328g00002 K08856 - sspl:121762867 346.28