Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3286g00005 ATGGCCTCTTCAAATTCACCATGTGCAGCATGCAAGTTCTTGCGTCGCAAATGCCAACCCGAGTGTGCTTTTGCACCCTATTTTCCTCCCGACCAACCCCAGAAGTTTGCAAATGTTCATAGAATTTTTGGGGCCAGCAATGTCACCAAGCTTCTCAACGATTTGCACCCTCATCAACGTGAAGATGCTGTGAATTCCCTTGCTTATGAAGCTGAGATGAGACTCCGTGATCCTGTGTATGGCTGTGTTGGAGTCATATCACTCTTACAGCACCAACTTCGCCAGCTTCAAATGGATCTCTACTGCGCCAAATCTGAGCTCTCCAGGTACCAAAACCTAAGCAGCATCACCACCAATCACACCCTCATGGCCTCTGAATCCGCCGCAGCCTTCCACCACCACCACCACCAGAACAACAACACTGCTAACAGCTTTGGCCGAGACCATCACTACCACTTTCACCACCATCAGTTTTTTCCCAGAGACCAACACCAACAAGTAGCAAGAAGCTTTGATGGAGGCAACAACTACGATGCAAGCCTCTTGGCCATGAACATATCTGCCAGCTTAGGGCAACTCAACCAGCTTCAGCATCAGAGCGCTGCTGGCGGTGGCGATGACCGCCACACTGCCAACCGCTCCTAG 645 0.507 MASSNSPCAACKFLRRKCQPECAFAPYFPPDQPQKFANVHRIFGASNVTKLLNDLHPHQREDAVNSLAYEAEMRLRDPVYGCVGVISLLQHQLRQLQMDLYCAKSELSRYQNLSSITTNHTLMASESAAAFHHHHHQNNNTANSFGRDHHYHFHHHQFFPRDQHQQVARSFDGGNNYDASLLAMNISASLGQLNQLQHQSAAGGGDDRHTANRS 214
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3286g00005 214 ProSiteProfiles LOB domain profile. 6 107 IPR004883 -
Vium3286g00005 214 Pfam Lateral organ boundaries (LOB) domain 7 103 IPR004883 -
Vium3286g00005 214 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 4 141 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3286g00005 Vium-Chr3286 64638 65696 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3286g00005 2 214 AS2 family AT1G65620 61.972 2.07e-79 234
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Vium3286g00005 LOB 2.9e-42 No_clan