Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3284g00001 ATGGTTAAGCATAACAACGTCATCCCAAGTGGACACTTTCGGAAACATTGGCAAAACTATGTGAAGACTTGGTTTAATCAACCAGCGAGGAAGACCAGAAGACGATTAGCTCGGCAGAAGAAGGCTGTCAAAAATTTCCCCAGGCCAACTGCCGGACCTCTCAGGCCCGTAGTTCATGGTCAGACTTTGAAATACAACATGAAAGTCAGAGCTGGGAGAGGATTTTCTCTTGAGGAATTGAAGAGTGCTGGAATTCCAAAAAAACTTGCTCCAACTATTGGTATTGCTGTTGATCATCGTCGCAAGAACCGTTCTTTGGAGAGTCTGCAGGCCAATGTGCAGAGACTCAAAACATACAAGGCCAAGTTGGTTGTGTTCCCAAGACGAGCACGAAAGGTCAAGACTGGTGATTCTAGTGCTGAGGAACTAGCAAATGCTACCCAAGTTCAGGGTCCATTCTTGCCCATTGTAAGGGAGAAGCCTACTGTTGACCTTGTTAAGGTAACAGATGAAATGAAGTCATTCAAAGCTTACTATAAGCTTCGTCTTGAACGCACCAACCAACGTCACCATGGTGCCCGTTTAAAGAAAGCTGCTGAAGCAGAGAAGGAAGACAAAAAATAG 624 0.4503 MVKHNNVIPSGHFRKHWQNYVKTWFNQPARKTRRRLARQKKAVKNFPRPTAGPLRPVVHGQTLKYNMKVRAGRGFSLEELKSAGIPKKLAPTIGIAVDHRRKNRSLESLQANVQRLKTYKAKLVVFPRRARKVKTGDSSAEELANATQVQGPFLPIVREKPTVDLVKVTDEMKSFKAYYKLRLERTNQRHHGARLKKAAEAEKEDKK 207
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3284g00001 207 Hamap 50S ribosomal protein L13e [rpl13e]. 45 128 IPR001380 GO:0003735|GO:0005840|GO:0006412
Vium3284g00001 207 MobiDBLite consensus disorder prediction 188 207 - -
Vium3284g00001 207 PANTHER 60S RIBOSOMAL PROTEIN L13 1 207 IPR001380 GO:0003735|GO:0005840|GO:0006412
Vium3284g00001 207 Pfam Ribosomal protein L13e 7 185 IPR001380 GO:0003735|GO:0005840|GO:0006412
Vium3284g00001 207 ProSitePatterns Ribosomal protein L13e signature. 70 84 IPR018256 GO:0003735|GO:0005840|GO:0006412
Vium3284g00001 207 Gene3D - 167 207 - -
Vium3284g00001 207 FunFam 60S ribosomal protein L13 166 207 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3284g00001 Vium-Chr3284 442 2628 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3284g00001 2 192 Cytoplasmic Ribosomal Protein Gene Family AT3G49010 85.340 5.69e-123 344
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3284g00001 K02873 - gmx:100782333 375.17