Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3281g00018 ATGAGGGAGCCAATGGCTAACTTTGTGATTCCACTTCCTTTCATGCTCTTCATTACTCGTTGGTTTCTGTTGGCTCATCATGTCAGTGCTGCAGAGACTTCCACATACATAGTACACATGGACAGATCCCTTTTTCCCACTGTCTTTTCAACGCATCATGATTGGTTTGAATCCTCCGTTCAGTCCATAAAATCAGCAACACCTGGTCACTCATTCAAGCAATCACAGAAACAGATAGTGTATTCCTATAACCATGCCATGTATGGTTTTAGTGCAGTGCTAACCTCAGAAGAGTTAGAGGCTCTCAAGAACTCTCGTGGTTTTGTTGCGGCATATCCAGACAGAAATGTCACCTTAGACACCACTCACACTTTTGAGTTTCTCTCCCTAGCCTCTTCCAGTGGCCTCTGGCACGCTTCCAATTTGGGGGAGGATGTCATTGTGGGTGTTATTGACTCTGGTGTGTGGCCTGAGAGTGAAAGCTTCAAAGATGATGGCATGACCAAGAAAATTCCAAGTAAATGGAAAGGAACCTGTCAGGAAGGGCAAGACTTCAACTCTTCCATGTGCAACTTCAAACTGATCGGAGCTAGATATTTCAACAAAGGAGTGATTGCTGCAAAACCCAAGGTTAGAATCACTATGAACTCAGCCAGAGATACAGTGGGTCATGGAACTCACACATCTTCCACAGTTGCTGGCAACTACGTCAGTGGAGCCTCTTACTTTGGCTATGCCAAAGGGGTGGCCAGAGGCATTGCACCAAGAGCTAGGCTAGCCATGTACAAGGTCCTTTGGGAAGAGGGTCTTTACGCCTCTGATGTTTTGGCTGGAATGGACCAAGCCATTGCTGATGGGGTTGATGTCATTTCCATCTCTATTGGGCAGACTGGTGTTCCATTTTATGAAGATCCTGTAGCAATAGCTTCTTTCGCAGCAATGGAAAAAGGGGTGGTGGTTTCATCCTCTGCAGGTAACCAAGGTCCTGCTCTTGGAACTGTGCACAATGGAACCCCCTGGCTTCTGACTGTGGCTGCCGGAACAGTAGACCGCACATTTGGTTCTCTGACTCTTGGAAATGGCCAAACCATTATTGGTTGGACCTTGTTTCCCGCAAATGCGTTAGTGGAAAATCTTTCACTTATCTACAATAAGAATACATCAGCCTGTAACTCAGTGAAGTCGTTATCCAAAGTGGCCATGGAAGGGATCATTTTATGTGACTTGGTGTCAGACCCGGAGTTAGTGATTAAACAAAGGAGGTTTGTTAAAGAAGCCAGTTTGTTAGGGGCAGTATTTATCTCTGATCAACCATTAGTAAATGAAGAACTTGCCAGCTCTCCAAGTATTGTAATCAGTGCAAAGGACGCACCATCTGTGATCAAATATGCAAAAAGCCATAAGAATCCAACAGCCAGTATCAAATTTCAGCAAACATTTGTTGGAATAAAGCCAGCACCAGCTCTTGCTGATTACTCTTCAAGAGGTCCTTCACCTAGCTACCCTGGGGTCTTGAAGCCTGACATAATGGCACCTGGCTCTAGTATCCTTGCTGCTTACCCTCCTGATATATCTGTAGCTGCAATTGGTGACAATGTGTTCTTACCCAGTGACTACAATTTCATGTCTGGAACATCCATGGCCTGCCCTCATGCTTCTGGTGTTGCTGCTCTTTTGAAAGCTTCACACCCTGAATGGAGTGCAGCTGCTATAAGGTCTGCACTAGTAACCACAGCTAGCCATCTAGATAATACACAAAATCCAATTAGAGACTATGGCTATCCTTCAAAATATGCTTCCCCTCTTGCCATGGGAGCAGGTCAAATTGACCCTAACAAAGCACTTGATCCAGGTTTGATATATGATGCCACCCCACAGGACTACGTTAATCTCCTTTGTGCTTTGAATTACACACAAAAACAGATCTTAACCATTACAAGATCAGGTTCCTATAATTGTTCTAAACCATCGTTTGATCTTAACTACCCTTCATTCATAGCTCTCTACAGCAACAAAACAAGGTCAGTCGTCCACAAATTTAAGAGGACAGTGACCAATGTTGGAGATGGTGCTGCCACATACAGAGCCAAGGTGACAGAACCTAAGGGTTCTATGCTGACAGTGTCACCTGAGACATTATCATTCAGATACAAAAATGAGAAGCTAAGCTACAACGTGATGATAATGTATAGCAAGTACAAGAAGGAAAATATCTCGTACGGGGATCTTGTTTGGATCGAAGATGGTGGAAAACACACTGTTAGGAGCCCCATTGTAGTGCCCATGGCTAACTTTGTGATTCCACTTCCTTTCATGCTCTTCATTACTCATTGGTTTCTGTTGGCTCATCATGGCAGTGCTGCAGAGAGTTCCACATATATAGTCCACATGGACAAATCCCTGTTTCCTCGAGTCTTCACCACCCATCATGATTGGTTTGAATCCATCATTGATTCCTCTAAATCGGCAACACTTGGTAACTCATCCATACAATCACAGAAAGTGTACTCCTATAGCCAAGCAATGTATGGCTTCAGTGCAGTTCTAACATCAGAAGAGTTAGAGGCTGTCAAAAGCTCCCTTGGCTTTGTTGCAGCATATCCAGACAGAACTGCCACCATAGACACCACTCACACTTTTGAGTTTCTCTCCCTAGACTCTTCCAGTGGTCTGTGGCATGCATCAAATTTTGGGGAGGATGTCATTGTGGGTGTTATTGACTCTGGTGTGTGGCCTGAGAGTGAAAGCTTCAAAGATGATGGCATGACCAAGAAAATTCCAAGTAAATGGAAAGGGACCTGTCAGGAAGGGCAAGACTTCAACACTTCCATGTGCAACTTCAAACTGATCGGAGCTAGATATTTCAACAAAGGAGTGATTGCTGGAAACCGCAAGGTTAAAATCAGTATGAACTCAGCCAGAGATACAGAGGGTCATGGAACTCACACATCTTCCACAGTTGCTGGCAACTATGTCAGTGGAGCCTCTTACTTTGGCTACGCTAAAGGGGTGGCCAGAGGCATTGCACCAAGAGCTAGGCTTGCCATGTACAAGGTCCTTTGGGAAGAGGGTCGTTACTCCTCTGATGTTTTGGCTGGAATGGACCAAGCCATTGCTGATGGGGTTGATGTCATTTCCATCTCTATGGGGTTTGATGGTGTTCCACTTTATGAGGATCCTATAGCAATAGCTTCTTTTGCAGCAATGGAAAAAGGGGTGTTGGTTTCATCCTCTGCAGGTAATGAAGGTCCTGATCTTGGTACTCTGCACAATGGAATCCCCTGGCTTCTGACCGTGGCTGCAGGTACCATTGACCGCACATTTGGTTCTCTAATTCTTGGAAATGGCCAAACCATTATTGGATGGACCTTGTTTCCTGCAAACGCGGTAGTGGAGGACTTTCCACTTATCTACAATAAGAATACATCAGCCTGTAACTCAGTGAAGTCGTTAACCGAAGTGGCCATGGAAGGGATCATTGTATGTGACCCAGTTTCAGACCCTGAGTTAGTGTTTGAACAAAGGAGGTTTGTCAGAGAAGCCAGCTTGTTAGGGGCAGTATTTATCTCTGATCAACCTTTAGTAAATGAAGGACATGCCAGATCTCCAAGTATTGTAATCAGTGCAAAGGATGCACCATCTGTGTTCAAATATGCAAAAAGCCATAAGAATCCAACAGCCAGTATCAAATTTCAGCAAACATTTGTTGGAATAAAGCCAGCACCGGCTCTTGCCGATTACTCTTCAAGAGGTCCTTCACCTAGCTACCCTGGGGTCTTGAAGCCTGACATAATGGCACCTGGCTCTAATGTCCTTGCTGCTTTCATTCCTGATACTCCAGCAGCTGCAATTGGCAACAATGTGTACTTACCTACTGACTACAATTTGCTGTCTGGGACATCCATGGCCTGCCCTCATGCTTCTGGTGTTGCTGCTCTTCTGAAAGCTGCACACCCTGAATGGAGTGCTGCTGCTATAAGGTCTGCACTAGTAACCACAGCCAGTCCTCTAGATAATACACAAAATCCAATTAGAGACTATGGCTATCCTTCTCAATATGCTTCCCCTCTAGACATGGGAGCAGGTCAAATTGACCCTAACAAAGCACTTGATCCAGGTTTGATATATGATGCCACCCCACAAGACTATGTTAATCTCCTTTGTGCTTTGAATTACACACAAAAACAGATCTTAACCATTACAAGATCAGGTTTCTATAATTGTGCAAAACCATCGTTTGATCTTAACTATCCTTCATTCATAGCTCTCTACAGCAACAAAACAAGGTCAGTCGTCCACAAATTTAAGAGGACAGTGACCAATGTTGGAGGTGGTCCTGCCATATACAGAGCCAAGGTGACAGAGCCTAAGGGTTCTGTGTTGACAGTGTCACCTGAGACATTATCATTCAGATACAAAAATGAGAAGCTAAGCTACAATGTGCTGATAAAATATAGCAAGTACAAGAAGGAAAATATCTCGTATGGGGATCTTGTTTGGATCGAAGACGGTGGAACACACACTGTTAGGAGCCCCATTGTAGTGGCACCAACTGGAATTGTATGA 4566 0.4446 MREPMANFVIPLPFMLFITRWFLLAHHVSAAETSTYIVHMDRSLFPTVFSTHHDWFESSVQSIKSATPGHSFKQSQKQIVYSYNHAMYGFSAVLTSEELEALKNSRGFVAAYPDRNVTLDTTHTFEFLSLASSSGLWHASNLGEDVIVGVIDSGVWPESESFKDDGMTKKIPSKWKGTCQEGQDFNSSMCNFKLIGARYFNKGVIAAKPKVRITMNSARDTVGHGTHTSSTVAGNYVSGASYFGYAKGVARGIAPRARLAMYKVLWEEGLYASDVLAGMDQAIADGVDVISISIGQTGVPFYEDPVAIASFAAMEKGVVVSSSAGNQGPALGTVHNGTPWLLTVAAGTVDRTFGSLTLGNGQTIIGWTLFPANALVENLSLIYNKNTSACNSVKSLSKVAMEGIILCDLVSDPELVIKQRRFVKEASLLGAVFISDQPLVNEELASSPSIVISAKDAPSVIKYAKSHKNPTASIKFQQTFVGIKPAPALADYSSRGPSPSYPGVLKPDIMAPGSSILAAYPPDISVAAIGDNVFLPSDYNFMSGTSMACPHASGVAALLKASHPEWSAAAIRSALVTTASHLDNTQNPIRDYGYPSKYASPLAMGAGQIDPNKALDPGLIYDATPQDYVNLLCALNYTQKQILTITRSGSYNCSKPSFDLNYPSFIALYSNKTRSVVHKFKRTVTNVGDGAATYRAKVTEPKGSMLTVSPETLSFRYKNEKLSYNVMIMYSKYKKENISYGDLVWIEDGGKHTVRSPIVVPMANFVIPLPFMLFITHWFLLAHHGSAAESSTYIVHMDKSLFPRVFTTHHDWFESIIDSSKSATLGNSSIQSQKVYSYSQAMYGFSAVLTSEELEAVKSSLGFVAAYPDRTATIDTTHTFEFLSLDSSSGLWHASNFGEDVIVGVIDSGVWPESESFKDDGMTKKIPSKWKGTCQEGQDFNTSMCNFKLIGARYFNKGVIAGNRKVKISMNSARDTEGHGTHTSSTVAGNYVSGASYFGYAKGVARGIAPRARLAMYKVLWEEGRYSSDVLAGMDQAIADGVDVISISMGFDGVPLYEDPIAIASFAAMEKGVLVSSSAGNEGPDLGTLHNGIPWLLTVAAGTIDRTFGSLILGNGQTIIGWTLFPANAVVEDFPLIYNKNTSACNSVKSLTEVAMEGIIVCDPVSDPELVFEQRRFVREASLLGAVFISDQPLVNEGHARSPSIVISAKDAPSVFKYAKSHKNPTASIKFQQTFVGIKPAPALADYSSRGPSPSYPGVLKPDIMAPGSNVLAAFIPDTPAAAIGNNVYLPTDYNLLSGTSMACPHASGVAALLKAAHPEWSAAAIRSALVTTASPLDNTQNPIRDYGYPSQYASPLDMGAGQIDPNKALDPGLIYDATPQDYVNLLCALNYTQKQILTITRSGFYNCAKPSFDLNYPSFIALYSNKTRSVVHKFKRTVTNVGGGPAIYRAKVTEPKGSVLTVSPETLSFRYKNEKLSYNVLIKYSKYKKENISYGDLVWIEDGGTHTVRSPIVVAPTGIV 1521
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3281g00018 1521 CDD PA_subtilisin_like 355 474 - -
Vium3281g00018 1521 Pfam Subtilase family 898 1346 IPR000209 GO:0006508|GO:0008236
Vium3281g00018 1521 ProSiteProfiles Serine proteases, subtilase domain profile. 879 1370 - -
Vium3281g00018 1521 ProSitePatterns Serine proteases, subtilase family, serine active site. 1299 1309 IPR023828 -
Vium3281g00018 1521 Gene3D - 1387 1517 - -
Vium3281g00018 1521 Gene3D - 632 762 - -
Vium3281g00018 1521 FunFam Subtilisin-like protease SBT1.9 782 875 - -
Vium3281g00018 1521 Pfam Peptidase inhibitor I9 35 119 IPR010259 -
Vium3281g00018 1521 Pfam Peptidase inhibitor I9 792 872 IPR010259 -
Vium3281g00018 1521 SUPERFAMILY Subtilisin-like 120 619 IPR036852 GO:0004252|GO:0006508
Vium3281g00018 1521 Gene3D Peptidase S8/S53 domain 145 628 IPR036852 GO:0004252|GO:0006508
Vium3281g00018 1521 PANTHER PROPROTEIN CONVERTASE SUBTILISIN/KEXIN 36 760 IPR045051 -
Vium3281g00018 1521 CDD Peptidases_S8_3 873 1335 IPR034197 -
Vium3281g00018 1521 Gene3D - 1105 1236 - -
Vium3281g00018 1521 Gene3D - 350 481 - -
Vium3281g00018 1521 Gene3D Peptidase S8 propeptide/proteinase inhibitor I9 24 120 IPR037045 -
Vium3281g00018 1521 Gene3D Peptidase S8 propeptide/proteinase inhibitor I9 781 874 IPR037045 -
Vium3281g00018 1521 Gene3D Peptidase S8/S53 domain 900 1383 IPR036852 GO:0004252|GO:0006508
Vium3281g00018 1521 ProSitePatterns Serine proteases, subtilase family, serine active site. 544 554 IPR023828 -
Vium3281g00018 1521 Pfam Subtilase family 143 593 IPR000209 GO:0006508|GO:0008236
Vium3281g00018 1521 ProSiteProfiles Serine proteases, subtilase domain profile. 122 615 - -
Vium3281g00018 1521 CDD PA_subtilisin_like 1110 1229 - -
Vium3281g00018 1521 FunFam Subtilisin-like protease SBT1.5 900 1113 - -
Vium3281g00018 1521 Pfam Fibronectin type-III domain 1414 1515 IPR041469 -
Vium3281g00018 1521 Pfam Fibronectin type-III domain 659 760 IPR041469 -
Vium3281g00018 1521 PRINTS Subtilisin serine protease family (S8) signature 975 988 IPR015500 -
Vium3281g00018 1521 PRINTS Subtilisin serine protease family (S8) signature 1298 1314 IPR015500 -
Vium3281g00018 1521 PRINTS Subtilisin serine protease family (S8) signature 898 917 IPR015500 -
Vium3281g00018 1521 CDD Peptidases_S8_3 117 580 IPR034197 -
Vium3281g00018 1521 SUPERFAMILY Subtilisin-like 875 1374 IPR036852 GO:0004252|GO:0006508
Vium3281g00018 1521 FunFam Subtilisin-like protease SBT1.9 25 120 - -
Vium3281g00018 1521 FunFam Subtilisin-like protease SBT1.5 145 357 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3281g00018 Vium-Chr3281 212199 223352 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3281g00018 9 759 Subtilisin-like Serine Gene Family AT5G67090 43.338 0.0 565
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3281g00018 - - var:108328904 3008.39