Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3281g00017 ATGGAGCTTCACAAGCTCAATATTCTCATCACAATCCTGTTCCTATATTTGTTCCCTCATTCACAAAATTGCCAACAAGTATACCTCAACAACACTGTCTATGACTGCTCTGATGACCCTTCTGTAGCAAAAGGATATCTTTGCAATGGCCTTCAAGATTCATGCACTTCCTTCTTAGTTTTCAGGTCCAAATCTCCCTATGACAACCCTCTCATGATTGCTTACCTTCTTGGCTCAGAAACATCTGATATAACCTCAATCAACAATATCTCAACAACTGAGAAGATTCCTTCCAATAACTCAATCATTGTTCCTGTCTTCTGTTCATGTAATGGAAACATCTATCAGTATGACACACTTTACACTGTCAAAGAAAATGATACCTACTGGGCCTTGGTAAAAGAAACCTTCCAAGGCCTCACCACCTGTCAAGCAATTATGGGTCAAAATTACTATCCTCCAACTAATATTGCAATTGATGCAGAGCTCAAGGTTCCAATGTTATGTGCTTGTCCCACTGCAAATCAGACAGAAAGAGGGGTCACCTCTTTGCTGGTTTACTCTGTCAACTCTGGTGACAGTGTTAAGTCCATAGGAGAGGCTTATGATGTGGATGAACAAAGTATACTAGAGGCCAATGAGTTGTCAGAGTCACGGAGTGCAAACAGCAGCATGCTTCTCCCTGACTCCACACCTATTTTAGTTCCTCTAATGGGGAAGAACTGCAAAGAGAATCCAGATAAATTCTACTGTAAATGTTACAGAGAACCACTAACAGATGGAAGCTCCAAGGGGCTATTATGTGATGAATCTGGTGGCAATGAATTTCCTGTCAGATTGGTTGCTGCTTTAGGTGTTGGACTTGGTTTAGGCTTTCTGTGTTTGTTTCTTCTGGGATACAAATCATATCAGTACATACAGAAAAGGAGAGAAAGTATCCGAAAGGAAAACCTTTTCAGGAAAAATGGTGGCTACTTGTTACAAGAGAAGCTCTCATCTTACGGAAATGGAGAAATGGCAAAGCTTTTTACAGGCGAGGAGCTACAAAGAGCCACAGATAACTACAACAGCAGTAGGTTTGTTGGTCAGGGTGGCTATGGCACAGTGTACAAAGGAATGTTACCTGATGGAACCATAGTTGCAGTTAAAAGGTCCAAAGAAATTGAAGGGAACCAGATAGAGACTTTTGTGAATGAAGTGGTGATTCTATCACAGATTAACCACAGGAACATTGTCAAACTATTGGGTTGTTGTCTTGAGACAGAAACTCCTTTATTAGTCTATGAATTCATTCCAAATGGAACACTCTCTCACCATATCCACAGGAGAGACAATGAGCCCTCCCTTTCATGGGAGAGTCGCCTTAGAATTGCATGTGAGGTTGCTGGAGCAGTGGCATATATGCATTTTGCAGCTTCAATTCCCATTTTCCATAGAGACATTAAACCTACCAACATACTTTTAGACAGCAACTTCAGTGCCAAGGTGTCTGATTTTGGAACATCAAGATCAGTGCCACAAGATAAGACTCACTTGACCACAGCTGTAGGAGGAACTTTTGGGTACATTGACCCTGAATATTTTCAGTCTGGAAAGTTTTCAGATAAAAGTGATGTGTACAGTTTTGGGGTAGTGCTGGTAGAGCTCATAAGTGGGAGAAAGCCAATTTCATTCTTAGAGGAAGATGAGGGTCAAAATCTGATTGCAGAGTTTCTTTCTCTGATGAAGGAGAACCAAGTTAATGAAATTTTAGATGGAATGGTGGCTAAGGAGGCAATGAAAGATGACATTTTTGCCATTGGAAACCTTGCAATGAGATGCTTGAGACTTAATGGGAGGAAAAGGCCAACAATGAAGGAGGTTTCACTGGAATTAGAAGCATTGAGAAAGGTTCAAAGTTCCTTACAGATCAAACATGATGATGAATACCCAACTACTGACATAGTTGAAGAATGCACAGACGAAAGGATGCCACTTTGCTCAGAACAAGACTCCACATCCTTCTAG 2007 0.4096 MELHKLNILITILFLYLFPHSQNCQQVYLNNTVYDCSDDPSVAKGYLCNGLQDSCTSFLVFRSKSPYDNPLMIAYLLGSETSDITSINNISTTEKIPSNNSIIVPVFCSCNGNIYQYDTLYTVKENDTYWALVKETFQGLTTCQAIMGQNYYPPTNIAIDAELKVPMLCACPTANQTERGVTSLLVYSVNSGDSVKSIGEAYDVDEQSILEANELSESRSANSSMLLPDSTPILVPLMGKNCKENPDKFYCKCYREPLTDGSSKGLLCDESGGNEFPVRLVAALGVGLGLGFLCLFLLGYKSYQYIQKRRESIRKENLFRKNGGYLLQEKLSSYGNGEMAKLFTGEELQRATDNYNSSRFVGQGGYGTVYKGMLPDGTIVAVKRSKEIEGNQIETFVNEVVILSQINHRNIVKLLGCCLETETPLLVYEFIPNGTLSHHIHRRDNEPSLSWESRLRIACEVAGAVAYMHFAASIPIFHRDIKPTNILLDSNFSAKVSDFGTSRSVPQDKTHLTTAVGGTFGYIDPEYFQSGKFSDKSDVYSFGVVLVELISGRKPISFLEEDEGQNLIAEFLSLMKENQVNEILDGMVAKEAMKDDIFAIGNLAMRCLRLNGRKRPTMKEVSLELEALRKVQSSLQIKHDDEYPTTDIVEECTDERMPLCSEQDSTSF 668
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3281g00017 668 Pfam Protein kinase domain 355 621 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium3281g00017 668 FunFam Wall-associated receptor kinase 2 326 430 - -
Vium3281g00017 668 ProSiteProfiles Protein kinase domain profile. 355 628 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium3281g00017 668 ProSitePatterns Serine/Threonine protein kinases active-site signature. 476 488 IPR008271 GO:0004672|GO:0006468
Vium3281g00017 668 Pfam LysM domain 187 218 IPR018392 -
Vium3281g00017 668 Pfam LysM domain 121 166 IPR018392 -
Vium3281g00017 668 ProSitePatterns Protein kinases ATP-binding region signature. 361 383 IPR017441 GO:0005524
Vium3281g00017 668 SMART LysM_2 120 166 IPR018392 -
Vium3281g00017 668 SMART LysM_2 186 236 IPR018392 -
Vium3281g00017 668 Gene3D Phosphorylase Kinase; domain 1 326 430 - -
Vium3281g00017 668 CDD STKc_IRAK 361 628 - -
Vium3281g00017 668 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 96 632 IPR045274 GO:0007166
Vium3281g00017 668 SUPERFAMILY Protein kinase-like (PK-like) 338 625 IPR011009 -
Vium3281g00017 668 Gene3D Transferase(Phosphotransferase) domain 1 431 653 - -
Vium3281g00017 668 FunFam Wall-associated receptor kinase 2 431 647 - -
Vium3281g00017 668 SMART serkin_6 355 628 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3281g00017 Vium-Chr3281 200389 203442 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3281g00017 285 629 Receptor kinase-like Gene Family AT1G16130 58.213 1.14e-138 422
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK Vium3281g00017 Pkinase 8.1e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3281g00017 - - gmx:100795455 1054.28