Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3281g00016 ATGAATGCATTAGATCTTAAACAGCTCTACCAAATTTACTTTGTCTTCTCCAGAGACAATAGGTTCATGGAGTTTCATCCTTACATTTACATTCTCTGCATAATTCTGTTCTTACAGATGTTTCCTGAATCTGCTAACTCTCAGCAAGCATACCTCAACAGCACTGTCTATGACTGCTCTGAGAACCCTTCTGCACCAAAAGGATACCTCTGCAATGGCCTTCAAAAGTCATGCACTTCCTTCTTAGTTTTCAGGTCCAAATCTCCCTATGACAACCCTGTAAGCATTGCCTACCTTTTTGGCTCTGAAGCATCTACCATAGCCTCAATAAACAACATCTCAAAAGATGATAAGATTCCTTCCAATAAGTCAATCATTGTTCCTGTATTCTGTTCATGTTCTGGAAATATCTACCAGCATATCACACCTTACACTGCCACCAAGAATGACACCTACTTCAAGTTGGTTACAGAAATTTACCAAGGCCTCACCACCTGCCAGGCCCTGATGGGTCAGAATTACTATGCCTCTGATGGCATTACAGTTGGTGCTGAGCTCACAGTTCCAGTAGTATGTGCTTGTCCCACTGAAAATCAGACAGCAAGAGGGGTCACTTCCTTGCTGGTTTACTCAGTGAAAAATGGTGATACTGTTAAGTCCATTGGAGAGGCTTATGGTGTTGACGAACAAAGTATGCTAGAGGCCAACGGGTTGTCAGTGCCGTCAACTGCAGACAACATCATAATCATCTATGCCACAACTCCTATCTTGGTTCCTCTCAGAGGGAAGAGTTGCAAAGAGGACCCTGACAGTTTCTATTGTACTTGCTCCCAGGGAACGGTTGCGAATGGAACCTTCATGGGGTTCCAATGTAATGAATCTGATGCTGAAAGTTTTCCTACCAAATTGGTTGCTTCCTTAGGTGTTGGACTTGGTGTAGGCTTTCTGTGTTTGTTTCTTCTGGGATACAAATCATATCAGTATATACAGAAGAAGAGAGAAAGTATCCGAAAGGAAAACCTTTTCAGGAAAAATGGTGGCTACTTGTTACAAGAGAAGCTCTCTTATTATGGGAAAGGAGAAATGGCAAAGCTGTTTAAAGCCGAGGAGCTACAGAAAGCAACAGATAACTATAACAGAAGTAGATTTCTTGGTCAGGGTGGCTTTGGCACTGTGTATAAAGGAATGCTACCAGATGGAACCATTGTTGCTGTTAAAAAGTCAAAAGAGATTGAAAGGAACCAGATAGAGACTTTAGTGAATGAAGTGATGATTCTATCACAGATCAACCACAGGAACATTGTCAAACTCTTTGGCTGTTGTCTTGAGACAGAAACTCCTTTACTAGTCTATGAATTCATTCCCAATAGAACACTCTCTCACCATATCCACAGGAGAGACAATGAGCCCTCCCTTTCATGGGAGAGTCGCCTTAGAATTGCATGTGAGGTTGCTGGAGCAGTGGCATATATGCATTTTGCAGCTTCTGTTCCCATTTTCCATAGAGACATCAAACCTACCAACATACTTTTAGACAGCAACTTCAGTGCCAAAGTGTCTGATTTTGGAACATCAAGATCAGTGCCACAAGATAAGACTCACTTGACCACAGCTGTAGGAGGAACTTTTGGGTACATAGACCCTGAATATTTTCAGTCTAGTCAGTTTTCAGATAAAAGTGATGTGTACAGTTTTGGGGTAGTGCTGGTAGAACTTATAAGTGGGAGAAAGCCAATTTCCTTCTTAGAGGAAGATGAGGGTCAGAATCTGATTGCAGAGTTTCTTTGTGTGATGAAGGAGAACAAAGTTTATGAGATTTTAGATGGCAGGGTTGTTAAGGAAGCAAGGAAAGATGAGATTCTTGCAATTGCAAACCTTGCAATGAGATGCTTGAGACTTAATGGGAAGAAAAGACCAACAATGAAAGAGGTTTCATTGGAATTAGAAGCATTGAAAAAGCTGCAAAGTTCCTTAGAGATCAACCATGATCAGGAGTATACAACTAGCGAGACAGTTCAAGAAATCACAGATGAAAGCATGCCACTGTTCTCAGAACTGGACTCCACATCCTTTTAG 2076 0.4147 MNALDLKQLYQIYFVFSRDNRFMEFHPYIYILCIILFLQMFPESANSQQAYLNSTVYDCSENPSAPKGYLCNGLQKSCTSFLVFRSKSPYDNPVSIAYLFGSEASTIASINNISKDDKIPSNKSIIVPVFCSCSGNIYQHITPYTATKNDTYFKLVTEIYQGLTTCQALMGQNYYASDGITVGAELTVPVVCACPTENQTARGVTSLLVYSVKNGDTVKSIGEAYGVDEQSMLEANGLSVPSTADNIIIIYATTPILVPLRGKSCKEDPDSFYCTCSQGTVANGTFMGFQCNESDAESFPTKLVASLGVGLGVGFLCLFLLGYKSYQYIQKKRESIRKENLFRKNGGYLLQEKLSYYGKGEMAKLFKAEELQKATDNYNRSRFLGQGGFGTVYKGMLPDGTIVAVKKSKEIERNQIETLVNEVMILSQINHRNIVKLFGCCLETETPLLVYEFIPNRTLSHHIHRRDNEPSLSWESRLRIACEVAGAVAYMHFAASVPIFHRDIKPTNILLDSNFSAKVSDFGTSRSVPQDKTHLTTAVGGTFGYIDPEYFQSSQFSDKSDVYSFGVVLVELISGRKPISFLEEDEGQNLIAEFLCVMKENKVYEILDGRVVKEARKDEILAIANLAMRCLRLNGKKRPTMKEVSLELEALKKLQSSLEINHDQEYTTSETVQEITDESMPLFSELDSTSF 691
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3281g00016 691 ProSiteProfiles Protein kinase domain profile. 378 651 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium3281g00016 691 FunFam Wall-associated receptor kinase 2 454 671 - -
Vium3281g00016 691 Gene3D LysM domain 196 268 IPR036779 -
Vium3281g00016 691 SMART LysM_2 143 189 IPR018392 -
Vium3281g00016 691 SMART LysM_2 89 128 IPR018392 -
Vium3281g00016 691 SMART LysM_2 209 259 IPR018392 -
Vium3281g00016 691 SUPERFAMILY Protein kinase-like (PK-like) 362 648 IPR011009 -
Vium3281g00016 691 Coils Coil 641 661 - -
Vium3281g00016 691 ProSitePatterns Serine/Threonine protein kinases active-site signature. 499 511 IPR008271 GO:0004672|GO:0006468
Vium3281g00016 691 Pfam LysM domain 210 242 IPR018392 -
Vium3281g00016 691 Pfam LysM domain 94 128 IPR018392 -
Vium3281g00016 691 CDD LysM 209 243 IPR018392 -
Vium3281g00016 691 Gene3D Transferase(Phosphotransferase) domain 1 454 677 - -
Vium3281g00016 691 FunFam Wall-associated receptor kinase 2 349 453 - -
Vium3281g00016 691 CDD STKc_IRAK 384 651 - -
Vium3281g00016 691 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 77 655 IPR045274 GO:0007166
Vium3281g00016 691 ProSitePatterns Protein kinases ATP-binding region signature. 384 407 IPR017441 GO:0005524
Vium3281g00016 691 SMART serkin_6 378 651 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium3281g00016 691 Gene3D Phosphorylase Kinase; domain 1 352 453 - -
Vium3281g00016 691 Pfam Protein kinase domain 378 644 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3281g00016 Vium-Chr3281 196978 199408 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3281g00016 308 652 Receptor kinase-like Gene Family AT1G16130 57.349 8.01e-138 420
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK Vium3281g00016 Pkinase 1.3e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3281g00016 - - vun:114186184 1272.3