Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3281g00015 ATGGAGCTTCTTCACAACCTCAACATTCTCACCACAGTTATGCTCCTATGCATGTTCCCTCACTCACTCAAGTGCCAACAAGCATACCTCAATGACACTGTCTATGACTGTTCTGACAACCCTTCTGCACCAAAAGGCTACCTTTGCAATGGCCTTCGAAAGTCATGCACTTCCTTCTTACTTTTCAGGTCCAAACCTCCCTATGATAGCCCTGTCAGAATTGCCTACCTTCTTGGCTCTGAGGCATCTACCATAGCCTCAATCAACAACATCTCAAGAAATGACAAGATTGCTTCTAACAAGACAATCATTGTTCCTGTATTCTGTTCATGTTCAGGAAACATCTACCAGCACAACACACCTTACACTGCCAGCAAGAATGACACCTATTATCAGTTGGTAACAGAAACCTTCCAAGGTCTCACTACCTGTCAATCAATGATGGGTCAGAATTACTATGCAGCAACCAAAATTGCAATTGGTGCTGAGCTCACAGTTCCCTTGTTATGTGCTTGTCCAACTGTAAATCAGACAGCAATAGGGGTCACCTCCTTGTTGGTTTACTTGGTGAACTATGGTGACACTATTGAATCCATAGGAAAGGCTTATGGTGTGGATGAACAAAGAATGCTTGAGGCCAATGAGTTGGCTGTGCCACAAAGTGAAAACATAAACACGGATCTCCTTTCCTTGACACCTCTTTTAGTTCCTCTAATAGGGAAGAGCTGCAAAGAGAACCCAGATAAATTCTATTGCAAATGTTATCAAGCACCGGATGGAAGCTCTAAGGGGCCCTTCTGTGATGAGTCTGATGGTCAGAAATTCCCTGCCAAGTTGGTAGCCGCTTTAGGAGCAGGACTTGGTGTAGGCTTTCTGTGTTTGTTTCTTCTGGGATACAAATCATATCAGTATATACAGAAGAAGAGAGAAAATATCCGAAAGGAAAACCTTTTCAGGCAAAATGGTGGCTACTTGTTACAAGAGAAGCTCTCATCTTACGGAAATGGAGAAATGGCAAAGCTTTTTACAGCTGAGGAGCTACAAAGAGCAACAGATAGCTATAACAGGAGTAGGTTTCTTGGTCAGGGTGGCTATGGCACAGTGTACAAAGGAATGTTACCTGATGGAACCATAGTTGCAGTTAAAAGGTCCAAAGAAATTGAAAGGAACCAGATAGAGACTTTTGTGAATGAAGTGGTGATTCTATCACAGATCAACCACAGGAACATTGTCAAACTATTAGGTTGTTGTCTTGAGACAGAAACTCCTTTACTAGTCTATGAATTCATTCCAAATGGAACACTCTCTCACCATATCCACAGGAGAGACAATGAGCCCTCCCTTTCATGGGAGAGTCGCCTTAGAATTGCATGTGAGGTTGCTGGAGCAGTGGCATATATGCATTTTGCAGCTTCTGTTCCCATTTTCCATAGAGACATCAAACCTACCAACATACTTTTAGACAACAACTTCAGTGCCAAGGTGTCTGATTTTGGAACATCAAGATCAGTGCCACAAGATAAGACTCACTTGACCACAGCTGTGGGAGGAACTTTTGGGTACATTGACCCTGAGTATTTTCAGTCTAGTAAGTTTTCAGATAAAAGTGATGTGTACAGTTTTGGGGTAGTGCTGGTAGAGCTCATAAGTGGGAGAAAGCCAATTTCATTCTTAGAGGAAGATGAGGGTCAGAATCTGATAGCACAGTTTCTTTCTCTGATGAAGGAGAACCAAGTTTATGAAATTTTAGATGGAAGGGTGGCTAAGGAAGCAATGAAAGATGACATTCTAGCCATTGCAAACCTTGCAATGAGATGCTTGAGACTTAATGGGAGGAAAAGGCCAACCATGAAGGAGGTTTCACTGGAACTAGAAGCATTGAGAAAGGTGCAAAGTTCCTTACAGATCAAACATGATCATGAGCACAAAACTAGTGATATTATTCAAGAGTGCACAGAGGAAAGCATGTCACTGTCCTTACAACTAGAGTCTACATCCTTATAG 2004 0.4222 MELLHNLNILTTVMLLCMFPHSLKCQQAYLNDTVYDCSDNPSAPKGYLCNGLRKSCTSFLLFRSKPPYDSPVRIAYLLGSEASTIASINNISRNDKIASNKTIIVPVFCSCSGNIYQHNTPYTASKNDTYYQLVTETFQGLTTCQSMMGQNYYAATKIAIGAELTVPLLCACPTVNQTAIGVTSLLVYLVNYGDTIESIGKAYGVDEQRMLEANELAVPQSENINTDLLSLTPLLVPLIGKSCKENPDKFYCKCYQAPDGSSKGPFCDESDGQKFPAKLVAALGAGLGVGFLCLFLLGYKSYQYIQKKRENIRKENLFRQNGGYLLQEKLSSYGNGEMAKLFTAEELQRATDSYNRSRFLGQGGYGTVYKGMLPDGTIVAVKRSKEIERNQIETFVNEVVILSQINHRNIVKLLGCCLETETPLLVYEFIPNGTLSHHIHRRDNEPSLSWESRLRIACEVAGAVAYMHFAASVPIFHRDIKPTNILLDNNFSAKVSDFGTSRSVPQDKTHLTTAVGGTFGYIDPEYFQSSKFSDKSDVYSFGVVLVELISGRKPISFLEEDEGQNLIAQFLSLMKENQVYEILDGRVAKEAMKDDILAIANLAMRCLRLNGRKRPTMKEVSLELEALRKVQSSLQIKHDHEHKTSDIIQECTEESMSLSLQLESTSL 667
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3281g00015 667 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 103 635 IPR045274 GO:0007166
Vium3281g00015 667 SMART serkin_6 354 627 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium3281g00015 667 Gene3D Transferase(Phosphotransferase) domain 1 430 654 - -
Vium3281g00015 667 FunFam Wall-associated receptor kinase 2 325 429 - -
Vium3281g00015 667 CDD LysM 187 219 IPR018392 -
Vium3281g00015 667 SUPERFAMILY Protein kinase-like (PK-like) 337 624 IPR011009 -
Vium3281g00015 667 Gene3D Phosphorylase Kinase; domain 1 327 429 - -
Vium3281g00015 667 ProSiteProfiles Protein kinase domain profile. 354 627 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium3281g00015 667 Pfam LysM domain 188 220 IPR018392 -
Vium3281g00015 667 Pfam LysM domain 69 106 IPR018392 -
Vium3281g00015 667 ProSitePatterns Serine/Threonine protein kinases active-site signature. 475 487 IPR008271 GO:0004672|GO:0006468
Vium3281g00015 667 ProSitePatterns Protein kinases ATP-binding region signature. 360 382 IPR017441 GO:0005524
Vium3281g00015 667 Pfam Protein kinase domain 354 620 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium3281g00015 667 FunFam Wall-associated receptor kinase 2 430 647 - -
Vium3281g00015 667 CDD STKc_IRAK 360 627 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3281g00015 Vium-Chr3281 192122 194982 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3281g00015 274 628 Receptor kinase-like Gene Family AT1G16130 57.423 7.62e-142 430
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK Vium3281g00015 Pkinase 6e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3281g00015 - - gmx:100795455 1162.13