Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3281g00013 ATGTCAGTGTCTCCTTCTCCCTCAGTCTCCTTCTCCTACGGGCCACCCTTGAACACCAACAACAATGGACTAGACATATTCACCAAGGTCTTCCTGTTGCTCATCTTTTTCACTCTCTTCGTTCGTGTCTGTTACGTGTACATGAACATGCGACGAGAACAAAACGGCAACGACAACGTAAGCAACAGCATCGATTCCATGATCCATAATGATCAAAATGATAACCTCACCGGGCTACCCTATGACGTCATAAAGTCCTACCGCACTTTCCCTTACAGCAAAACCGATAGTGTTGTGGGAACAACGTGCGACCATGACACCACGTGCGCCATATGTATTGAGGATTACGAGGAATCGGAGATGCTGAGGGTGTTGCCGCAATGCCGCCACTACTTTCACCGAGACTGCGTCGACGCATGGCTGAAGGTTAATGCCACGTGTCCCGTTTGTAGGCACTCGCTCATGAAAACTGGAAGCAATAATAATATTAACCATAACAGTGTCATTAACAATGCCTTAGAACGTGTCTAA 531 0.4708 MSVSPSPSVSFSYGPPLNTNNNGLDIFTKVFLLLIFFTLFVRVCYVYMNMRREQNGNDNVSNSIDSMIHNDQNDNLTGLPYDVIKSYRTFPYSKTDSVVGTTCDHDTTCAICIEDYEESEMLRVLPQCRHYFHRDCVDAWLKVNATCPVCRHSLMKTGSNNNINHNSVINNALERV 176
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3281g00013 176 PANTHER RING-H2 FINGER PROTEIN ATL67 18 158 IPR044289 GO:0016567|GO:0016740
Vium3281g00013 176 Pfam Ring finger domain 108 151 IPR001841 -
Vium3281g00013 176 CDD RING-H2_PA-TM-RING 108 151 - -
Vium3281g00013 176 SUPERFAMILY RING/U-box 108 160 - -
Vium3281g00013 176 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 64 157 IPR013083 -
Vium3281g00013 176 SMART ring_2 109 150 IPR001841 -
Vium3281g00013 176 ProSiteProfiles Zinc finger RING-type profile. 109 151 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3281g00013 Vium-Chr3281 168552 169082 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3281g00013 15 153 C3H Transcription Factor Family AT5G07040 32.143 1.47e-19 79.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3281g00013 - - vun:114182932 299.671