Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3281g00012 ATGTCCCCTTCAATTCCCTCTCCTCACATCACCCACCTTGGCCTTGGCTACTCCATCGCCATAGCCCTCGCCTTCCTCTTCCTCCTCTCTACCCTTCTCCTCTCCTCCTATCTCTGCTGCCGCGCCACCCGACACCGCACCCAAACAACCGCCGTCACAACCGCCGCCACCAACCCCTCCGACGGCGTTGTCCTGCCGCGTGTCATCTTCGTGGCGGAGGACGACGACGACGACGAGGAGGCCAGCGTTGCGCTGGGGCTCGACCAGAGCGTCATTAATTCCTACCCCAGGTTCCAGTTCGACAGGGACAACGCGCGGAACAGTAACGGGAATAACAACACGTGCTCCATATGTTTGTGCGAGTACAAGGATTCGGAGATGCTCAGGATGATGCCCGAGTGCCGCCATTTCTTCCACCTCTGTTGCCTCGATTCCTGGCTCAGACTCAGAGGCACCTGCCCCGTTTGCCGCAACTCGCCGCTCCCGACGCCGCTCTCCACGCCGCTGCAGGAGGTGGTGCCGCTCTCTCAGTACGCCGCCGATAGAAGGCGAAGTAGGTGA 561 0.6114 MSPSIPSPHITHLGLGYSIAIALAFLFLLSTLLLSSYLCCRATRHRTQTTAVTTAATNPSDGVVLPRVIFVAEDDDDDEEASVALGLDQSVINSYPRFQFDRDNARNSNGNNNTCSICLCEYKDSEMLRMMPECRHFFHLCCLDSWLRLRGTCPVCRNSPLPTPLSTPLQEVVPLSQYAADRRRSR 186
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3281g00012 186 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 72 161 IPR013083 -
Vium3281g00012 186 SUPERFAMILY RING/U-box 114 162 - -
Vium3281g00012 186 PANTHER RING-H2 FINGER PROTEIN ATL67 7 185 IPR044289 GO:0016567|GO:0016740
Vium3281g00012 186 Pfam Ring finger domain 113 157 IPR001841 -
Vium3281g00012 186 ProSiteProfiles Zinc finger RING-type profile. 115 157 IPR001841 -
Vium3281g00012 186 SMART ring_2 115 156 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3281g00012 Vium-Chr3281 150848 151905 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3281g00012 1 176 C3H Transcription Factor Family AT5G07040 44.318 2.11e-41 135
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3281g00012 - - gmx:100793332 230.72