Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3281g00005 ATGATGGAAAGCCATGATCCACCACCCCGAAACGACCCTTTTCTGTTCAACCCTTTGGAACCTCAAGAGCAAGGGCTATGCGACTTTGACTCATGGGGTAACCTTTTCTCTGCCCAGAACAGCTTGTTGTTGCTTAATGGTGATGCCAAGGAAACTATTCAACGTGCTTCTTCTTCCTCTTTAGTGGCTCAAAATAAGGTAGTTTGCGAGGAGGAAAAGGGTAGCAAGGAGAAAAGGAAAGGTGTGAGAGTGAAGAAAACAACACGAGTGCCGAGGTTTGCTTTTCAAACGAGAAGTGCAGATGATGTTTTGGATGATGGTTATCGCTGGAGGAAATATGGACAGAAATCTGTGAAGAACAGCACATATCCAAGAAGTTACTACCGGTGCACGCACCACACGTGCAATGTGAAGAAACAAGTGCAAAGGCTGTCAAAAGACACAAGCATTGTGGTGACAACGTACGAGGGAATTCACAACCATCCATGCGAGAAGCTGATGGAAACTCTAACCCCTCTGCTGAAGCAAATACAGTTTCTTGCTAGCTTGTAA 552 0.4529 MMESHDPPPRNDPFLFNPLEPQEQGLCDFDSWGNLFSAQNSLLLLNGDAKETIQRASSSSLVAQNKVVCEEEKGSKEKRKGVRVKKTTRVPRFAFQTRSADDVLDDGYRWRKYGQKSVKNSTYPRSYYRCTHHTCNVKKQVQRLSKDTSIVVTTYEGIHNHPCEKLMETLTPLLKQIQFLASL 183
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3281g00005 183 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 59 165 IPR044810 GO:0003700
Vium3281g00005 183 SUPERFAMILY WRKY DNA-binding domain 97 163 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vium3281g00005 183 Pfam WRKY DNA -binding domain 105 162 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vium3281g00005 183 SMART WRKY_cls 104 163 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vium3281g00005 183 Gene3D WRKY domain 88 163 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vium3281g00005 183 ProSiteProfiles WRKY domain profile. 99 164 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vium3281g00005 183 FunFam WRKY transcription factor 57 90 164 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3281g00005 Vium-Chr3281 76655 77561 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3281g00005 77 183 WRKY Transcription Factor Family AT5G41570 74.766 7.29e-59 180
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Vium3281g00005 WRKY 1.8e-25 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3281g00005 - - gmx:100127398 286.574