Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3281g00002 ATGGCCGAAGATTGGGATCTACATGCGGTGGTCAGAGGTTGCTCCACCGTCACATCATCCTCCGTGTCGTCTTCTTCTTCCTCCTCCTCTGGTTTTGCCTCTTGTTACTTCCACCCTGAAGGAGTTTCCTCCTCCTCCTCTTCTTCTGGCTTTTCCATCTTCAGAGGTGAACAAGGAAGCCAGGTTCTGTCGCTTTCTGCGTACCCCTTTGAGGCAAGGAGCCCCATTGAGGAGCTGCATGAGCTTTGCAGGCCTTTCTTCTGCAAATCTCAGCCTCTCTCGTTGCAAGCCTCTTCCCCCTTGTCCTCACTCTCTTCCTATTCTTCTGCGCCTCCCAAAACGGTTTCATCTCAAGAGAAGCAACAACAACAGCGAAACAAGCAGCCGCTCTCTGTCACCACCCCACGATCTAAAAGAAGGAAGAACCAGCTTAAGAAAGTTTGTCAAGTGCCTTTTGAAAATCTCTCCTCGGACATATGGGCATGGAGGAAATATGGCCAGAAACCCATAAAGGGGTCTCCTTATCCAAGGGGGTACTACAGATGTAGCAGCTCAAAGGGGTGTTTGGCAAGGAAACAGGTTGAGAGGAACAGATCAGACCCAACCATGTTCATAGTGACTTACACTGCCGAGCACAACCATCCTGCTCCTACTCACAGAAACTCCCTTGCTGGCTCCACACGCCAGAAGCCACTGGCCCCTCAAACTGCCACCACCGAACAAGACTCTGACAAGATCAAGAGCCTCACAAAACCCTCCTCCCCTGCCACCTCAGGGGCAGAGGAAGAGGTTCCAGCACAAGTGGAAAAGTCTGAGAGCAGAGAAGAGAAAGAGGATGTGATGGATGATGAGGAAGAAGATGATTTTGTTTTGTCTGACATGGTGCTAACAGATGATTTCTTTGAGAGCTTGGATGAGCTGAGTCAGCTCACTGCCCCTTCTGTTGTCACAGGAGACTGCTTCAGTGACCCCTTTTCAGCTATGGCAATCCCTTCTTGGGTGGCCAGTGGTGCTGCTACTGCCGGTGGATGCATATGA 1038 0.5087 MAEDWDLHAVVRGCSTVTSSSVSSSSSSSSGFASCYFHPEGVSSSSSSSGFSIFRGEQGSQVLSLSAYPFEARSPIEELHELCRPFFCKSQPLSLQASSPLSSLSSYSSAPPKTVSSQEKQQQQRNKQPLSVTTPRSKRRKNQLKKVCQVPFENLSSDIWAWRKYGQKPIKGSPYPRGYYRCSSSKGCLARKQVERNRSDPTMFIVTYTAEHNHPAPTHRNSLAGSTRQKPLAPQTATTEQDSDKIKSLTKPSSPATSGAEEEVPAQVEKSESREEKEDVMDDEEEDDFVLSDMVLTDDFFESLDELSQLTAPSVVTGDCFSDPFSAMAIPSWVASGAATAGGCI 345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3281g00002 345 ProSiteProfiles WRKY domain profile. 151 217 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vium3281g00002 345 MobiDBLite consensus disorder prediction 211 286 - -
Vium3281g00002 345 MobiDBLite consensus disorder prediction 104 137 - -
Vium3281g00002 345 SMART WRKY_cls 156 216 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vium3281g00002 345 FunFam WRKY transcription factor 22 140 210 - -
Vium3281g00002 345 MobiDBLite consensus disorder prediction 214 257 - -
Vium3281g00002 345 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED 4 310 IPR044810 GO:0003700
Vium3281g00002 345 MobiDBLite consensus disorder prediction 104 145 - -
Vium3281g00002 345 SUPERFAMILY WRKY DNA-binding domain 154 217 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vium3281g00002 345 Gene3D WRKY domain 140 210 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vium3281g00002 345 Pfam WRKY DNA -binding domain 158 215 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3281g00002 Vium-Chr3281 52434 54454 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3281g00002 1 345 WRKY Transcription Factor Family AT4G01250 47.443 3.20e-84 255
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Vium3281g00002 WRKY 3.3e-25 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3281g00002 K13425 - gmx:100798084 544.658