Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium327g00001 ATGAATAGCGACCCCGACCTCTACTTATTGAAGAGGCGCCCAAATAACTGTGTTTCTTCGCCGGTCGCCACTCGCAAGACGCAAGTCACAATGCCTAAGCAGATCCACGAGATAAAGGATTTCCTTCTGACGGCGCGGAGGAAGGATGCGAGGTCGGTGAAAATCAAGAGGAGCAGGGATGTGGTTAAGTTCAAGGTTCGATGCTCCAAGTATTTGTACACGCTTTGCGTCTTTGACCCTGAGAAAGCCGATAAATTGAAGCAATCTCTTCCTCCTGGTTTGAGTGTTCAAGACCTGTAA 300 0.4867 MNSDPDLYLLKRRPNNCVSSPVATRKTQVTMPKQIHEIKDFLLTARRKDARSVKIKRSRDVVKFKVRCSKYLYTLCVFDPEKADKLKQSLPPGLSVQDL 99
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium327g00001 99 PANTHER 60S RIBOSOMAL PROTEIN L38 31 98 IPR002675 GO:0003735|GO:0005840|GO:0006412
Vium327g00001 99 FunFam 60S ribosomal protein L38 31 99 - -
Vium327g00001 99 Coils Coil 96 99 - -
Vium327g00001 99 Gene3D - 31 99 IPR038464 -
Vium327g00001 99 Pfam Ribosomal L38e protein family 32 98 IPR002675 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium327g00001 Vium-Chr327 6646 7374 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium327g00001 31 99 Cytoplasmic Ribosomal Protein Gene Family AT3G59540 94.203 1.27e-43 134
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium327g00001 K02923 - pop:18106877 140.584