Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3279g00004 ATGGCCACCGAAAAGCTTGGAGGTTGTGCCAAGTTCTTTGCAAGCTCAAAACCCTACTTGGCTATGATCTCTTTGCAGTTTGGGTATGCTGGCATGAACATTATCACAAAGGTTTCTCTCAACCAAGGCATGAGCCACTATGTTCTTGTGGTTTATCGTCACGCTTTCGCAACTGCCGTTATAGCTCCTTTTGCATTTATCTTTGAAAGGAAAGGTCAACCGAAGATAACATTCTCAATTTTCATGCAACTTTTTATCCTAGGTCTTCTTGGGCCAGTGATTGATCAAAATTTCTACTATGCCGGGTTGAAGCTCACATCCCCAACCTTCTCATGTGCAATGAGCAACATGCTTCCGGCTATGACTTTTGTGATGGCTGTGTTTTGCAGAATGGAGAAGATAAACATGAAGCAAGTGAGATGCATAGCAAAGATAGTGGGAACATTAGTGACAGTTGCAGGAGCTATGCTAATGACCTTATACAGAGGTCCTATAGTGGAGATGTGGGCCAAACATCCCCACAATAAAACCAATGGAACAACAAGCACAGGATCATTGGACAAAGATTGGTTCTTAGGATGCATCTTTCTTATCATTGCCACCCTTGCATGGGCTTCCCTCTTTGTTTTACAAGCAAAAGCTATACAAACCTACAAGAATCATCAACTCAGCCTGACTTCACTTGTGTGCTTTATTGGCACTGTTCAAGCTATTGCTGTTACTTTTGTTGTTGAACACAACCCTTCTGTTTGGAGAATTGGCTGGGATATGAACTTACTTGCTGCTGCATATGCTGGGATTGTGACATCAAGCATATCATACTATGTACAAGGACTGGTGATTAAGATGAAAGGACCTGTCTTTGCAACTGCTTTTAGCCCTTTGATGATGATCATTGTTGCCATCATGGGTTCCTTTATCCTTGCAGAACAAATTTATCTTGGAGGTGTGATTGGTGCCATCTTAATTGTTATAGGTTTATACTCAGTTCTATGGGGAAAGCACAAAGAATAA 1014 0.4152 MATEKLGGCAKFFASSKPYLAMISLQFGYAGMNIITKVSLNQGMSHYVLVVYRHAFATAVIAPFAFIFERKGQPKITFSIFMQLFILGLLGPVIDQNFYYAGLKLTSPTFSCAMSNMLPAMTFVMAVFCRMEKINMKQVRCIAKIVGTLVTVAGAMLMTLYRGPIVEMWAKHPHNKTNGTTSTGSLDKDWFLGCIFLIIATLAWASLFVLQAKAIQTYKNHQLSLTSLVCFIGTVQAIAVTFVVEHNPSVWRIGWDMNLLAAAYAGIVTSSISYYVQGLVIKMKGPVFATAFSPLMMIIVAIMGSFILAEQIYLGGVIGAILIVIGLYSVLWGKHKE 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3279g00004 337 SUPERFAMILY Multidrug resistance efflux transporter EmrE 238 335 - -
Vium3279g00004 337 PANTHER WAT1-RELATED PROTEIN 17 337 IPR030184 GO:0016020|GO:0022857
Vium3279g00004 337 Pfam EamA-like transporter family 18 158 IPR000620 GO:0016020
Vium3279g00004 337 Pfam EamA-like transporter family 192 331 IPR000620 GO:0016020
Vium3279g00004 337 SUPERFAMILY Multidrug resistance efflux transporter EmrE 52 159 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3279g00004 Vium-Chr3279 27836 30477 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3279g00004 1 337 Nodulin-like Gene Family AT5G07050 74.636 0.0 523
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3279g00004 - - gmx:100804390 636.721