Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3279g00003 ATGGCTACAGAAAAGCTTGGAGGTTGTGCAAAGTTCTTTGAATGCTCAAAACCCTACTTGGCCATGATTTCTTTACAATTTGGTTATGCTGGGATGACCATTATCACTAAGATTTCACTCAACCAAGGCATGAGTCATTATGTTCTTGTGGTTTATCGTCATGCTTTTGCTACCATCGCCATAGCTCCTTTTGCATTTATTTTTGAAAGGAAAGGCCAACCAAAGATAGCATTCTCAATTTTCATGCAAATTTTTATCCTAGCTCTTCTAGGGCCAGTGATTGATCAAAATTTCTTTTATGCTGGGTTGAAGCTCACATCCCCAACTTTCGCCTGTGCAATAAGCAACATGCTTCCAGCTATGACTTTTGTAATAGCAGTGTTTTGCAGGATGGAGAAGATAAACATAAAGCAAGTGAGAAGCATAGCAAAGATAGTGGGAACATTAGTGACAGTTGGAGGGGCTATGCTAATGACCTTATACAGAGGTCCTATAGTGGAGATGGTTTGGATCAAACAAGCTCACTATAAAACCAATGGAACAACAAGCACAGGATCATTGGACAGAGATTGGTTATTGGGTTGCATTTTTCTCATCATTTCCACCATTGCTTGGGCTTCACTCTTTGTTTTACAAGCAAAAGCTATACAGACATACAAGAATCATCAGCTAACCCTAACTTCACTTGTGTGCTTTATGGGCACAGTTCAAGCTATTGTTGTTACTTATGTTGTTGAACACAATCCTTCAGTTTGGAAAATTGGATGGGATATAAACTTACTTACTGCTGCATATTCAGGGGTTGTTTCATCAAGCATATCATACTATGTACAAGGACTGGTAATCAAGAAGAAAGGACCTGTCTTTGCAACTTCCTTTAGCCCTTTAATGATGATCATTTCTGCTATCATGGGTTACTTTATCCTTGCAGAAAAAACTTATCTTGGAGGTGTGATTGGTGCCATCTTAATTGTTATAGGTTTATACTCAGTTCTATGGGGAAAGCACAAAGAACAAATGGAGAACCAAGTGGAAGCTGAAATTCCCTTGCCTGTAAATGATGCTGAAAGTTCAGTAACAGAAGAGCAAAATATGGTTGATGCTAGAGATTATTTCACTGAAGAAAAACATGATCAGAAAGTAGAACCCATCAATCTCAAGTTTTCTTCGATTGTAATAACGTTGTCTATTCAAGAGTCTCCTACTAGATAA 1212 0.382 MATEKLGGCAKFFECSKPYLAMISLQFGYAGMTIITKISLNQGMSHYVLVVYRHAFATIAIAPFAFIFERKGQPKIAFSIFMQIFILALLGPVIDQNFFYAGLKLTSPTFACAISNMLPAMTFVIAVFCRMEKINIKQVRSIAKIVGTLVTVGGAMLMTLYRGPIVEMVWIKQAHYKTNGTTSTGSLDRDWLLGCIFLIISTIAWASLFVLQAKAIQTYKNHQLTLTSLVCFMGTVQAIVVTYVVEHNPSVWKIGWDINLLTAAYSGVVSSSISYYVQGLVIKKKGPVFATSFSPLMMIISAIMGYFILAEKTYLGGVIGAILIVIGLYSVLWGKHKEQMENQVEAEIPLPVNDAESSVTEEQNMVDARDYFTEEKHDQKVEPINLKFSSIVITLSIQESPTR 403
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3279g00003 403 SUPERFAMILY Multidrug resistance efflux transporter EmrE 256 337 - -
Vium3279g00003 403 PANTHER WAT1-RELATED PROTEIN 17 343 IPR030184 GO:0016020|GO:0022857
Vium3279g00003 403 SUPERFAMILY Multidrug resistance efflux transporter EmrE 52 160 - -
Vium3279g00003 403 Pfam EamA-like transporter family 18 147 IPR000620 GO:0016020
Vium3279g00003 403 Pfam EamA-like transporter family 193 332 IPR000620 GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3279g00003 Vium-Chr3279 22793 25321 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3279g00003 1 400 Nodulin-like Gene Family AT5G07050 61.728 1.85e-177 498
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3279g00003 - - gmx:100804390 624.009