Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3278g00012 ATGAGTGCTCCGTCGCGAGAAGAGGGGTCGAAAGAAGAGGAGAAAGACGAGGAGGCGAACCGGCTTCTAGAGGAAGCAGGAGCGGTATCGTCATCGGAAGAAGATGTCGCATACGAAGCGGGGGAGAAGATCCTGGTGGCGGATTTCGATTTTGACACAGTGGACGATGCGACGGTTCCTCCTTTCTCATGGAAGAAGCTGTGGCTCTTCACTGGGCCTGGGTTCTTGATGAGCATAGCTTTTTTGGATCCGGGGAATCTCGAGGGGGATCTCCAGTCTGGGGCCATCGCGGGCTACTCGCTCCTCTGGCTCTTGATGTGGGCCACCATCATGGGCCTCTTGATCCAGCTTCTGTCCGCCAGAGTCGGGGTCGCCACGGGCCGCCACCTCGCTGAGCTCTGTCGGGATGAGTATCCCCATTGGGCCCGCCTTGTGCTCTGGTTCATGGCCGAGCTGGCCCTGATTGGCGCCGACATTCAAGAGGTCATTGGAAGTGCCATCGCCATCCAAATTCTTAGCCGAGGCGTCCTCCCTCTCTGGGTTGGAGTTCTAATCACTGCTTCCGACTGCTTTTTCTTTCTATTTCTTGAGAACTATGGTGTGAGGAAGTTGGAAGCTGCTTTTGCAGTTCTCATTTCTATTATGGGTCTTTCTTTTGCCTGGATGTTTGCTGATGCAAGACCTAATAGACAAGAGCTTTTAATGGGTATTTTGGTTCCGAGACTAAGCTCAAAAACAATTCGTCAAGCTGTGGGTGTTGTGGGTTGTGTCATTATGCCTCACAATGTATTCCTGCATTCTGCTTTGGTTCAATCAAGGAAGGTTGATCCTAATAAGAAAGGTCGGGTACAGGAGGCTCTCAACTACTATTCAATCGAGTCATCAGCTGCACTTTCAGTCTCCTTCTTGATCAATCTATTTGTCACAACAGTTTTTGCTAAGGGTTTTTATGGAACAAAGCAGGCAAAAGACATAGGACTCGTCAATGCAGGGCAATATCTTGAAGAAAAGTATGGAGGAGGAGTTTTCCCTATTCTTTATATATGGGGAATAGGGTTATTGGCAGCTGGCCAGAGTAGCACCATCACTGGCACATACGCTGGGCAGTTCATAATGGGGGGTTTCCTCAACCTTCGTTTAAAGAAATGGATGAGAGCATTGATCACTCGAAGTTTTGCAATTGTGCCAACTATAATTGTAGCTATAGTTTTTAATACATCAGAAGCCTCCTTGGACATTTTGAATGAATGGCTCAATGTGCTTCAGTCCATGCAAATTCCCTTTGCTTTGATTCCCCTCCTCACATTGGTCTCCAAAGAGCAGCTCATGGGAACCTTTAGAGTTGGACCTGTTCTTGAGAGAGTAGCATGGACTGTTGCTGGACTGATAATAGTGATTAATGGGTATCTCTTGTTAGATTTCTTCATTTCTGAAGTGAATGGCGTCTTGCTTGGTCTTTTAGCCTGCTCCTGCACGACAGCCTATATTGCGTTCATAGTATATTTGGTTTCACGGAGCGGTATTCTTCCTTCTGCATGGGTTAATCGTCTTCCCAAGGGATTTTCTTCAACTGGGAATTAA 1581 0.4756 MSAPSREEGSKEEEKDEEANRLLEEAGAVSSSEEDVAYEAGEKILVADFDFDTVDDATVPPFSWKKLWLFTGPGFLMSIAFLDPGNLEGDLQSGAIAGYSLLWLLMWATIMGLLIQLLSARVGVATGRHLAELCRDEYPHWARLVLWFMAELALIGADIQEVIGSAIAIQILSRGVLPLWVGVLITASDCFFFLFLENYGVRKLEAAFAVLISIMGLSFAWMFADARPNRQELLMGILVPRLSSKTIRQAVGVVGCVIMPHNVFLHSALVQSRKVDPNKKGRVQEALNYYSIESSAALSVSFLINLFVTTVFAKGFYGTKQAKDIGLVNAGQYLEEKYGGGVFPILYIWGIGLLAAGQSSTITGTYAGQFIMGGFLNLRLKKWMRALITRSFAIVPTIIVAIVFNTSEASLDILNEWLNVLQSMQIPFALIPLLTLVSKEQLMGTFRVGPVLERVAWTVAGLIIVINGYLLLDFFISEVNGVLLGLLACSCTTAYIAFIVYLVSRSGILPSAWVNRLPKGFSSTGN 526
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3278g00012 526 NCBIfam metal ion transporter, metal ion (Mn2+/Fe2+) transporter (Nramp) family 65 443 IPR001046 GO:0016020|GO:0030001|GO:0046873
Vium3278g00012 526 Hamap Divalent metal cation transporter MntH [mntH]. 53 475 IPR001046 GO:0016020|GO:0030001|GO:0046873
Vium3278g00012 526 PANTHER SOLUTE CARRIER PROTEIN FAMILY 11 MEMBER 21 504 IPR001046 GO:0016020|GO:0030001|GO:0046873
Vium3278g00012 526 Pfam Natural resistance-associated macrophage protein 88 449 IPR001046 GO:0016020|GO:0030001|GO:0046873
Vium3278g00012 526 NCBIfam Nramp family divalent metal transporter 72 442 - -
Vium3278g00012 526 PRINTS Natural resistance-associated macrophage protein signature 146 172 IPR001046 GO:0016020|GO:0030001|GO:0046873
Vium3278g00012 526 PRINTS Natural resistance-associated macrophage protein signature 250 273 IPR001046 GO:0016020|GO:0030001|GO:0046873
Vium3278g00012 526 PRINTS Natural resistance-associated macrophage protein signature 357 376 IPR001046 GO:0016020|GO:0030001|GO:0046873
Vium3278g00012 526 PRINTS Natural resistance-associated macrophage protein signature 201 222 IPR001046 GO:0016020|GO:0030001|GO:0046873
Vium3278g00012 526 PRINTS Natural resistance-associated macrophage protein signature 385 402 IPR001046 GO:0016020|GO:0030001|GO:0046873
Vium3278g00012 526 PRINTS Natural resistance-associated macrophage protein signature 419 438 IPR001046 GO:0016020|GO:0030001|GO:0046873
Vium3278g00012 526 PRINTS Natural resistance-associated macrophage protein signature 176 195 IPR001046 GO:0016020|GO:0030001|GO:0046873
Vium3278g00012 526 MobiDBLite consensus disorder prediction 1 23 - -
Vium3278g00012 526 MobiDBLite consensus disorder prediction 1 35 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3278g00012 Vium-Chr3278 51998 55894 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3278g00012 7 506 Inorganic Solute Cotransporters AT1G47240 78.287 0.0 808
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3278g00012 K21398 - gmx:100791117 929.858