Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3278g00011 ATGCGCACTGCACAATCTCAGCCTCACCGGTGGCAACATGCTTGGATGCTGCCTCCTCTCGCCATTTGGATTTCTGTTTCAGCAACACTCCGTTATGGGTATTACAGGGATTCCTTTATCTTGCTTGGTCCTGCCTCATCCCGTTTGATTACAACCAGTTCTGTTTTTGTGAAGCAGCTTCAAGTGTCAAGCAAGGATAAAAATCAAGTCTTTGTTCACACTTTCAATAAGAAGCCCGAGTTGAGCTCCCAAACTAATTGGACGGCGTCGGATTTTTTCCTTGTTGAAGCGTATAAAAGCAAGGGGATTTCTCTGTGGTTAAATCACGGCTCCACCATCCGTCTTAGGTGGGAAGAACATACTACTACTGGTTTGGATAAGCTACATGGAATGGTGGTTAAAGGAGACGTGAGGTTTGAACAACTACAGGATTCACATACGACCTTCCTCAATTCAATTTCTCTTCGAGAGACTGTTAATGGTAAAGAAGCTGAATACATGGTCGAGGAAGATGATAGATACCACATTGGAGTTCTAAACATGAATGCAAAGAACATAATCTTGACTATGGAAGTTAATGTTTCAGCAAAGGTATATGATACCACCAAAGCCAAGAAGATGTGCTCCACTGAAAATGGACCTTGTAAGCTCAGTTTTTTCTTCCCAGATACTCATTATGTTATTCTTACGGCAGCCAACAATGGAGATGGGGTAACGTATGTTGACATTTCTTTAGTGGCCCGTGTGTTTGTCTACGTATTACTTCTAGGAGTTATTGCGATTGTTGTTTATCTGATTCTGAAAATTCTTGGAGTTTATGGTGATGCTGAGCAGCATAGTCAAGTTACAATCGATGTTACATACAGAACAAGTAATGTGGTTGCAACACGGGCCGAAACTGAGCCATTGATGCGAGGGGAGGAAAATCGAATGTCATATGGAACAAATGCAAAAGATGATAAACAAAATTCAGAAGCATGTAGTAGCTCTTCCTCAGAGGAGTTATATGATGAAAAATTATGTTGCATTTGTTATGATGAACAACGCAACAGCTTCTTTGTTCCTTGTGGACACTGTGCCACTTGCTATGACTGCGCACAGAGGATTGTCGATGAGGAGAGCAGAGTATGTCCTATATGCCGAAGGCTTATTCACAAAGTACGAAGATTGTTTCCCATTTAG 1182 0.4162 MRTAQSQPHRWQHAWMLPPLAIWISVSATLRYGYYRDSFILLGPASSRLITTSSVFVKQLQVSSKDKNQVFVHTFNKKPELSSQTNWTASDFFLVEAYKSKGISLWLNHGSTIRLRWEEHTTTGLDKLHGMVVKGDVRFEQLQDSHTTFLNSISLRETVNGKEAEYMVEEDDRYHIGVLNMNAKNIILTMEVNVSAKVYDTTKAKKMCSTENGPCKLSFFFPDTHYVILTAANNGDGVTYVDISLVARVFVYVLLLGVIAIVVYLILKILGVYGDAEQHSQVTIDVTYRTSNVVATRAETEPLMRGEENRMSYGTNAKDDKQNSEACSSSSSEELYDEKLCCICYDEQRNSFFVPCGHCATCYDCAQRIVDEESRVCPICRRLIHKVRRLFPI 393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3278g00011 393 Pfam Domain of unknown function (DUF4792) 73 136 IPR032008 -
Vium3278g00011 393 Pfam Domain of unknown function (DUF4793) 164 265 IPR032010 -
Vium3278g00011 393 PANTHER OS05G0521000 PROTEIN 20 391 - -
Vium3278g00011 393 ProSiteProfiles Zinc finger RING-type profile. 341 381 IPR001841 -
Vium3278g00011 393 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 314 391 IPR013083 -
Vium3278g00011 393 Pfam Zinc finger, C3HC4 type (RING finger) 338 387 - -
Vium3278g00011 393 SUPERFAMILY RING/U-box 331 388 - -
Vium3278g00011 393 SMART ring_2 341 380 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3278g00011 Vium-Chr3278 29052 31736 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3278g00011 324 391 C3H Transcription Factor Family AT1G62370 33.824 3.82e-06 45.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3278g00011 - - gmx:100794488 585.489