Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3278g00008 ATGGTCGAGGAAGATGATAGATACCACATTGGAGTTCTAAACATGAATGCAAAGAACATAATCTTGACTATGGAAGTTAATGTTTCAGCAAAGGTATATGATACCACCAAAGCCAAGAAGATGTGCTCCACTGAAAATGGACCTTGTAAGCTCAGTTTTTTCTTCCCAGATACTCATTATGTTATTCTTACGGCAGCCAACAATGGAGATGGGGTAACGTATGTTGACATTTCTTTAGTGGCCCGTGTGTTTGTCTACGTATTACTTCTAGGAGTTATTGCGATTGTTGTTTATCTGATTCTGAAAATTCTTGGAGTTTATGGTGATGCTGAGCAGCATAGTCAAGTTACAATCGATGTTACATACAGAACAAGTAATGTGGTTGCAACACGGGCCGAAACTGAGCCATTGATGCGAGGGGAGGAAAATCGAATGTCATATGGAACAAATGCAAAAGATGATAAACAAAATTCAGAAGCATGTAGTAGCTCTTCCTCAGAGGAGTTATATGATGAAAAATTATGTTGCATTTGTTATGATGAACAACGCAACAGCTTCTTTGTTCCTTGTGGACACTGTGCCACTTGCTATGACTGCGCACAGAGGATTGTCGATGAGGAGAGCAGAGTATGTCCTATATGCCGAAGGCTTATTCACAATGTACGAAGATTGTTTCCCATTTAG 684 0.3977 MVEEDDRYHIGVLNMNAKNIILTMEVNVSAKVYDTTKAKKMCSTENGPCKLSFFFPDTHYVILTAANNGDGVTYVDISLVARVFVYVLLLGVIAIVVYLILKILGVYGDAEQHSQVTIDVTYRTSNVVATRAETEPLMRGEENRMSYGTNAKDDKQNSEACSSSSSEELYDEKLCCICYDEQRNSFFVPCGHCATCYDCAQRIVDEESRVCPICRRLIHNVRRLFPI 227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3278g00008 227 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 149 225 IPR013083 -
Vium3278g00008 227 PANTHER OS05G0521000 PROTEIN 2 225 - -
Vium3278g00008 227 ProSiteProfiles Zinc finger RING-type profile. 175 215 IPR001841 -
Vium3278g00008 227 Pfam Domain of unknown function (DUF4793) 2 99 IPR032010 -
Vium3278g00008 227 SMART ring_2 175 214 IPR001841 -
Vium3278g00008 227 Pfam Zinc finger, C3HC4 type (RING finger) 172 220 - -
Vium3278g00008 227 SUPERFAMILY RING/U-box 165 222 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3278g00008 Vium-Chr3278 23512 25827 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3278g00008 158 225 C3H Transcription Factor Family AT1G62370 33.824 9.21e-07 46.2