Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3278g00007 ATGCGCACTGCACAATCTCAGCCTCACCGGTGGCAACATGCTTGGATGCTGCCTCCTCTCGCCATTTGGATTTCTGTTTCAGCAACACTCCGTTATGGGTATTACAGGGATTCCTTTATCTTGCTTGGTCCTGCCTCATCCCGTTTGATTACAACCAGTTCTGTTTTTGTGAAGCAGCTTCAAGTGTCAAGCAAGGATAAAAATCAAGTCTTTGTTCACACTTTCAATAAGAAGCCCGAGTTGAGCTCCCAAACTAATTGGACGGCGTCGGATTTTTTCCTTGTTGAAGCGTATAAAAGCAAGGGGATTTCTCTGTGGTTAAATCACGGCTCCACCATCCGTCTTAGGTGGGAAGAACATACTACTACTGGTTTGGATAAGCTACATGGGATGGTGGTTAAAGGAGACGTGAAGTTTGAACAACTACAGGATTCACATACGACCTTCCTCAATTCAATTTCTCTTCGAGAGACTGTTAATGGTAAAGAAGCTGAATACATGGTCGAGGAAGATGATAGATACCACATTGGAGTTCTAAACATGAATGCAAAGAACATAATCTTGACTATGGAAGTTAATGTTTCAGCAAAGGTATATGATACCACCAAAGCCAAGAAGATGTGCTCCACTGAAAATGGACCTTGTAAGCTCAGTTTTTTCTTCCCAGATACTCATTATGTTATTCTTACGGCAGCCAACAATGGAGATGGGGTAACGTATGTTGACATTTCTTTAGTGGCCCGTGTGTTTGTCTACGTATTACTTCTAGGAGTTATTGCGATTGTTGTTTATCTGATTCTGAAAATTCTTGGAGTTTATGGTGATGCTGAGCAGCATAGTCAAGTTACAATCGATGTTACATACAGAACAAGTAATGTGGTTGCAACACGGGCCGAAACTGAGCCATTGATGCGAGGGGAGGAAAATCGAATGTCATATGGAACAAATGCAAAAGATGATAAACAAAATTCAGAAGCATGTAGTAGCTCTTCCTCAGAGGAGTTATATGATGAAAAATTATGTTGCATTTGTTATGATGAACAACGCAACAGCTTCTTTGTTCCTTGTGGACACTGTGCCACTTGCTATGACTGCGCACAGAGGATTGTCGATGAGGAGAGCAGAGTATGTCCTATATGCCGAAGGCTTATTCACAATGTACGAAGATTGTTTCCCATTTAG 1182 0.4162 MRTAQSQPHRWQHAWMLPPLAIWISVSATLRYGYYRDSFILLGPASSRLITTSSVFVKQLQVSSKDKNQVFVHTFNKKPELSSQTNWTASDFFLVEAYKSKGISLWLNHGSTIRLRWEEHTTTGLDKLHGMVVKGDVKFEQLQDSHTTFLNSISLRETVNGKEAEYMVEEDDRYHIGVLNMNAKNIILTMEVNVSAKVYDTTKAKKMCSTENGPCKLSFFFPDTHYVILTAANNGDGVTYVDISLVARVFVYVLLLGVIAIVVYLILKILGVYGDAEQHSQVTIDVTYRTSNVVATRAETEPLMRGEENRMSYGTNAKDDKQNSEACSSSSSEELYDEKLCCICYDEQRNSFFVPCGHCATCYDCAQRIVDEESRVCPICRRLIHNVRRLFPI 393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3278g00007 393 Pfam Domain of unknown function (DUF4793) 164 265 IPR032010 -
Vium3278g00007 393 ProSiteProfiles Zinc finger RING-type profile. 341 381 IPR001841 -
Vium3278g00007 393 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 315 391 IPR013083 -
Vium3278g00007 393 Pfam Zinc finger, C3HC4 type (RING finger) 338 386 - -
Vium3278g00007 393 SMART ring_2 341 380 IPR001841 -
Vium3278g00007 393 Pfam Domain of unknown function (DUF4792) 73 138 IPR032008 -
Vium3278g00007 393 SUPERFAMILY RING/U-box 331 388 - -
Vium3278g00007 393 PANTHER OS05G0521000 PROTEIN 20 391 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3278g00007 Vium-Chr3278 18742 21469 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3278g00007 324 391 C3H Transcription Factor Family AT1G62370 33.824 2.16e-06 46.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3278g00007 - - gmx:100794488 584.719