Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3278g00006 ATGCTTGGATGCTGCCTCCTCTCGCCATTTGGATTTCTGGCATTTTCAGCAACACTCCGTTATGGGTATTACAGGGATTCCTTTATCTTGCTTGGTCCTGCCTCATCCCGTTTGATTACAACCAGTTCTGTTTTTGTGAAGCAGCTTCAAGTGTCAAGCAAGGATAAAAATCAAGTCTTTGTTCACACTTTCAATAAGAAGCCCGAGTTGAGCTCCCAAACTAATTGGACGGCGTCGGATTTTTTCCTTGTTGAAGCGTATAAAAGCAAGGGGATTTCTCTGTGGTTAAATCACGGCTCCACCATCCGTCTTAGGTGGGAAGAACATACTACTACTGGTTTGGATAAGCTACATGGGATGGTGGTTAAAGGAGACGTGAAGTTTGAACAACTACAGGATTCACATACGACCTTCCTCAATTCAATTTCTCTTCGAGAGACTGTTAATGGTAAAGAAGCTGAATACATGGTCGAGGAAGATGATAGATACCACATTGGAGTTCTAAACATGAATGCAAAGAACATAATCTTGACTATGGAAGTTAATGTTTCAGCAAAGGTATATGATACCACCAAAGCCAAGAAGATGTGCTCCACTGAAAATGGACCTTGTAAGCTCAGTTTTTTCTTCCCAGATACTCATTATGTTATTCTTACGGCAGCCAACAATGGAGATGGGGTAACGTATGTTGACATTTCTTTAGTGGCCCGTGTGTTTGTCTACGTATTACTTCTAGGAGTTATTGCGATTGTTGTTTATCTGATTCTGAAAATTCTTGGAGTTTATGGTGATGCTGAGCAGCATAGTCAAGTTACAATCGATGTTACATACAGAACAAGTAATGTGGTTGCAACACGGGCCGAAACTGAGCCATTGATGCGAGGGGAGGAAAATCGAATGTCATATGGAACAAATGCAAAAGATGATAAACAAAATTCAGAAGCATGTAGTAGCTCTTCCTCAGAGGAGTTATATGATGAAAAATTATGTTGCATTTGTTATGATGAACAACGCAACAGCTTCTTTGTTCCTTGTGGACACTGTGCCACTTGCTATGACTGCGCACAGAGGATTGTCGATGAGGAGAGCAGAGTATGTCCTATATGCCGAAGGCTTATTCACAATGTACGAAGATTGTTTCCCATTTAG 1149 0.4108 MLGCCLLSPFGFLAFSATLRYGYYRDSFILLGPASSRLITTSSVFVKQLQVSSKDKNQVFVHTFNKKPELSSQTNWTASDFFLVEAYKSKGISLWLNHGSTIRLRWEEHTTTGLDKLHGMVVKGDVKFEQLQDSHTTFLNSISLRETVNGKEAEYMVEEDDRYHIGVLNMNAKNIILTMEVNVSAKVYDTTKAKKMCSTENGPCKLSFFFPDTHYVILTAANNGDGVTYVDISLVARVFVYVLLLGVIAIVVYLILKILGVYGDAEQHSQVTIDVTYRTSNVVATRAETEPLMRGEENRMSYGTNAKDDKQNSEACSSSSSEELYDEKLCCICYDEQRNSFFVPCGHCATCYDCAQRIVDEESRVCPICRRLIHNVRRLFPI 382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3278g00006 382 SUPERFAMILY RING/U-box 320 377 - -
Vium3278g00006 382 SMART ring_2 330 369 IPR001841 -
Vium3278g00006 382 Pfam Domain of unknown function (DUF4793) 153 254 IPR032010 -
Vium3278g00006 382 ProSiteProfiles Zinc finger RING-type profile. 330 370 IPR001841 -
Vium3278g00006 382 PANTHER OS05G0521000 PROTEIN 10 380 - -
Vium3278g00006 382 Pfam Domain of unknown function (DUF4792) 62 127 IPR032008 -
Vium3278g00006 382 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 304 380 IPR013083 -
Vium3278g00006 382 Pfam Zinc finger, C3HC4 type (RING finger) 327 375 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3278g00006 Vium-Chr3278 18740 21469 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3278g00006 313 380 C3H Transcription Factor Family AT1G62370 33.824 2.20e-06 46.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3278g00006 - - gmx:100777075 582.793