Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3278g00004 ATGGAGACCCGTGCAGCTGCAAAGAGAAAGGCAACCGCTGCTGCTGCTCCCATGGTGGTGGTCCAAAAACAACATCCCAAAAGGCAGCGTGTTGTGCTGGGTGAACTTTCAAATTTTCCGAATGCAACTCAAAACAAACGCAAAGAGAAACTACAATGTCGGAAGAATCCAAATTTAAAGAAACCATCTCCCACAGAGTTCATTTCCTCTTCATCACAGTTTGACCAACCTTACGTTTTCGACATCTATGAGTATCTTCATGGGATGGAGATGCAGAAGAAGAGGAGACCAATGATTGACTACATCGAGAAAGTTCAGGGAGAAGTTACTGTAATCATGAGGACAATATTGGTGAATTGGTTAGTGGAGGTAGCTGAAGAGTACAATCTTCACTCGGATACCCTTCATCTCTCTGTTTCATACATAGATAGATTTTTGTCAGTGAATCCTGTTAGTAAGTCAAGACTTCAATTACTTGGTGTTTCGGCCATGCTCATTGCTGCAAAGTATGACGAAGTTGATCCACCCCGTGTTGATGCTTTTTGCAACATCACTGACAACACATACAAGAAGGCAGAGGTTGTAAAGATGGAAGCTGACATACTCAAGTCTCTAAAGTTTGAGATGGGAAATCCTACTGTGAACACCTTTCTAAGGAGGTTTGTTGATGTTGCTTGTGATAACCAAAAGGCTTCAAATTTACAGTTTGAATTTCTAAGCTGCTATCTTGCTGACCTAAGTTTGTTGGACTACGATTGCTTGAGAATTTTGCCTTCTATAGTGGCAGCTTCAGCTGTATTTCTTGCCAGATTTATTATTGCTCCTGAAGTTCATCCTTGGACTTCTTCCTTGTCTGAGTGTTCTGGTTACAAACCAGTTGAACTGAAAGAATGTGTCATGATTTTGCATGACTTGTATTTTTCAAGAAAGGCATCGTTTTTCAAAGCTGTCAGGGAGAAATACAAGCAGCACAAGTTCAAGTTCGTAGCAAGATTGCCTTCTCCTCCACATATACCAAGTCATTACTTTGAAACTCAGTGA 1041 0.4102 METRAAAKRKATAAAAPMVVVQKQHPKRQRVVLGELSNFPNATQNKRKEKLQCRKNPNLKKPSPTEFISSSSQFDQPYVFDIYEYLHGMEMQKKRRPMIDYIEKVQGEVTVIMRTILVNWLVEVAEEYNLHSDTLHLSVSYIDRFLSVNPVSKSRLQLLGVSAMLIAAKYDEVDPPRVDAFCNITDNTYKKAEVVKMEADILKSLKFEMGNPTVNTFLRRFVDVACDNQKASNLQFEFLSCYLADLSLLDYDCLRILPSIVAASAVFLARFIIAPEVHPWTSSLSECSGYKPVELKECVMILHDLYFSRKASFFKAVREKYKQHKFKFVARLPSPPHIPSHYFETQ 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3278g00004 346 ProSitePatterns Cyclins signature. 114 145 IPR006671 -
Vium3278g00004 346 Pfam Cyclin, C-terminal domain 212 334 IPR004367 -
Vium3278g00004 346 CDD CYCLIN_AtCycA-like_rpt2 212 326 - -
Vium3278g00004 346 MobiDBLite consensus disorder prediction 43 68 - -
Vium3278g00004 346 SUPERFAMILY Cyclin-like 73 209 IPR036915 -
Vium3278g00004 346 PIRSF Cyclin_A_B_D_E 1 344 IPR046965 GO:0016538|GO:0044772
Vium3278g00004 346 SMART cyclin_7 119 203 IPR013763 -
Vium3278g00004 346 SMART cyclin_7 216 304 IPR013763 -
Vium3278g00004 346 Pfam Cyclin, N-terminal domain 81 209 IPR006671 -
Vium3278g00004 346 FunFam Cyclin superfamily protein, putative 209 281 - -
Vium3278g00004 346 SUPERFAMILY Cyclin-like 212 337 IPR036915 -
Vium3278g00004 346 PANTHER CYCLINS 60 323 IPR039361 -
Vium3278g00004 346 Gene3D - 95 210 - -
Vium3278g00004 346 FunFam G2/mitotic-specific cyclin 97 208 - -
Vium3278g00004 346 SMART Cyclin_C_2 212 335 IPR004367 -
Vium3278g00004 346 Gene3D - 81 331 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3278g00004 Vium-Chr3278 8838 10883 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3278g00004 3 344 Core Cell Cycle Gene Families AT5G43080 55.202 7.70e-128 368
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3278g00004 K06627 - gmx:100787417 525.013