Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3278g00002 ATGGAGACCCGTGCAGCTGCAAAGAGAAAGGCAACCGCTGCTGCTGCTCCCATGGTGGTGGTCCAAAAACAACATCCCAAAAGGCAGCGTGTTGTGCTGGGTGAACTTTCAAATTTTCCGAATGCAACTCAAAACAAACGCAAAGAGAAACTACAATGTCGGAAGAATCCAAATTTAAAGAAACCATCTCCCACAGAGTTCATTTCCTCTTCATCACAGTTTGACCAACCTTACGTTTTCGACATCTATGAGTATCTTCATGGGATGGAGATGCAGAAGAAGAGGAGACCAATGATTGACTACATCGAGAAAGTTCAGGGAGAAGTTACTGTAATCATGAGGACAATATTGGTGAATTGGTTAGTGGAGGTAGCTGAAGAGTACAATCTTCACTCGGATACCCTTCATCTCTCTGTTTCATACATAGATAGATTTTTGTCAGCGAATCCTGTTAGTAAGTCAAGACTTCAATTACTTGGTGTTTCGGCCATGCTCATTGCTGCAAAGTATGACGAAGTTGATCCACCCCGTGTTGATGCTTTTTGCAACATCACTGACAACACATACAAGAAGGCAGAGGTTGTAAAGATGGAAGCTGACATACTCAAGTCTCTAAAGTTTGAGATGGGAAATCCTACTGTGAACACCTTTCTAAGGAGGTTTGTTGATGTTGCTTGTGATAACCAAAAGGCTTCAAATTTACAGTTTGAATTTCTAAGCTGCTATCTTGCTGACCTAAGTTTGTTGGACTACGATTGCTTGAGAATTTTGCCTTCTATAGTGGCAGCTTCAGCTGTATTTCTTGCCAGATTTATTATTGCTCCTGAAGTTCATCCTTGGACTTCTTCCTTGTCTGAGTGTTCTGGTTACAAACCAGTTGAACTGAAAGAATGTGTCATGATTTTGCATGACTTGTATTTTTCAAGAAAGGCTGTCAGGGAGAAATACAAGCAGCACAAGTTCAAGTTCGTAGCAAGATTGCCTTCTCCTCCACATATACCAAGTCATTACTTTGAAACTCAGTGA 1026 0.4123 METRAAAKRKATAAAAPMVVVQKQHPKRQRVVLGELSNFPNATQNKRKEKLQCRKNPNLKKPSPTEFISSSSQFDQPYVFDIYEYLHGMEMQKKRRPMIDYIEKVQGEVTVIMRTILVNWLVEVAEEYNLHSDTLHLSVSYIDRFLSANPVSKSRLQLLGVSAMLIAAKYDEVDPPRVDAFCNITDNTYKKAEVVKMEADILKSLKFEMGNPTVNTFLRRFVDVACDNQKASNLQFEFLSCYLADLSLLDYDCLRILPSIVAASAVFLARFIIAPEVHPWTSSLSECSGYKPVELKECVMILHDLYFSRKAVREKYKQHKFKFVARLPSPPHIPSHYFETQ 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3278g00002 341 PIRSF Cyclin_A_B_D_E 2 339 IPR046965 GO:0016538|GO:0044772
Vium3278g00002 341 ProSitePatterns Cyclins signature. 114 145 IPR006671 -
Vium3278g00002 341 Pfam Cyclin, N-terminal domain 81 209 IPR006671 -
Vium3278g00002 341 Pfam Cyclin, C-terminal domain 212 329 IPR004367 -
Vium3278g00002 341 MobiDBLite consensus disorder prediction 43 68 - -
Vium3278g00002 341 CDD CYCLIN_AtCycA-like_rpt2 212 321 - -
Vium3278g00002 341 FunFam Cyclin superfamily protein, putative 209 281 - -
Vium3278g00002 341 SMART cyclin_7 119 203 IPR013763 -
Vium3278g00002 341 SMART cyclin_7 216 304 IPR013763 -
Vium3278g00002 341 Gene3D - 95 210 - -
Vium3278g00002 341 SUPERFAMILY Cyclin-like 73 209 IPR036915 -
Vium3278g00002 341 SUPERFAMILY Cyclin-like 212 332 IPR036915 -
Vium3278g00002 341 FunFam G2/mitotic-specific cyclin 97 208 - -
Vium3278g00002 341 Gene3D - 81 326 - -
Vium3278g00002 341 PANTHER CYCLINS 60 318 IPR039361 -
Vium3278g00002 341 SMART Cyclin_C_2 212 330 IPR004367 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3278g00002 Vium-Chr3278 3828 5951 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3278g00002 3 339 Core Cell Cycle Gene Families AT5G43080 55.202 3.51e-125 361