Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3278g00001 ATGGAAACTCTTGCAGGAAAGGGAAAGTCAAATGCCATTGCCTCCGTTGTGGTTCAGAGACAACATCCCAAGAAGCAACGGGTTGGGTTCACTCAACCTTCCAATTTACCAAACATCATTCTCTCAAAAAATGAGTCTTTGCAAAGAGAATCTGCAATCTCCTGGAATAACGTCAACCTTGAAAAACCAAATTCCATAAACAACTTTCTTCTTTCCTCTCAAATTCATGAACTTGATGTTTGGGACATCAATGAGTATCTTCGTGTCTTGGAGGTGACTATAAAAAGAAGACCTGTGGTTAACTATATTCATAAAGTTCAAAGAACAATTACCTCCAACAACAGAGCAGTACTGGTGGATTGGTTAGTAGAAGTTGCCGAGCAGTACAATCTTCTCTCCGATACTCTTCTGCTCTGTGTGTCATACATTGATAGATTTTTATCAGTCCAGCCCATGATCAGATCGAGGCTTCAATTGTTGGGTGTTTCCTGCATGTTCATTGCTTCGAAATATGAAGAAATTAATCCACCCAGTTTGAATGAGTTTTGCAACATCACTGACAACACCTATGACAAAACAGAGATTATAAAGATGGAAGCTGAAATACTCAAGGCCTTAAATTTTGAGATGGGAAATCCTACTGCAATCACTTTTTTGAGGTTTTTATCTGGTGCTGCTTCTGATTATGAAAAAACTCCAAATTGGAAGATTGAATTTCTGGGCTGGTATTTTGCTGAGCTAAGTTTGTTGGATGATGATTGTATAAGATTCTTGCCCTCTGTTGTAGCAGCTTCCGCTTTATTTCTGGCGAGATTTTTTATTGATCCTAAAGTGCATCCTTGGACTTCTTTCTTGTTTGAATGTTCGGGTTACAAACCAGTTGAGTTGAAAGAGTGTGTTCTCATCTTGCATGATTTGCATTTGTCAAGGAAGGCAGAATCATTCGAAGCTGTTAGGGAGAAATACAAGCAGCACAAATTCAAATACGTGTCAAATCTACCTTCTCCTTCATATGTACCAAGTTACTACTTTGAAGACCAGTTGCATATGACTGATCAGCAAAAGTTAT 1069 0.3854 METLAGKGKSNAIASVVVQRQHPKKQRVGFTQPSNLPNIILSKNESLQRESAISWNNVNLEKPNSINNFLLSSQIHELDVWDINEYLRVLEVTIKRRPVVNYIHKVQRTITSNNRAVLVDWLVEVAEQYNLLSDTLLLCVSYIDRFLSVQPMIRSRLQLLGVSCMFIASKYEEINPPSLNEFCNITDNTYDKTEIIKMEAEILKALNFEMGNPTAITFLRFLSGAASDYEKTPNWKIEFLGWYFAELSLLDDDCIRFLPSVVAASALFLARFFIDPKVHPWTSFLFECSGYKPVELKECVLILHDLHLSRKAESFEAVREKYKQHKFKYVSNLPSPSYVPSYYFEDQLHMTDQQKL 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3278g00001 356 SMART Cyclin_C_2 213 336 IPR004367 -
Vium3278g00001 356 PANTHER CYCLINS 77 324 IPR039361 -
Vium3278g00001 356 Gene3D - 96 211 - -
Vium3278g00001 356 ProSitePatterns Cyclins signature. 115 146 IPR006671 -
Vium3278g00001 356 FunFam Cyclin A1 200 332 - -
Vium3278g00001 356 SMART cyclin_7 120 204 IPR013763 -
Vium3278g00001 356 SMART cyclin_7 220 305 IPR013763 -
Vium3278g00001 356 Pfam Cyclin, N-terminal domain 85 210 IPR006671 -
Vium3278g00001 356 Pfam Cyclin, C-terminal domain 213 335 IPR004367 -
Vium3278g00001 356 SUPERFAMILY Cyclin-like 213 338 IPR036915 -
Vium3278g00001 356 SUPERFAMILY Cyclin-like 79 210 IPR036915 -
Vium3278g00001 356 Gene3D - 82 332 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3278g00001 Vium-Chr3278 535 2239 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3278g00001 9 346 Core Cell Cycle Gene Families AT5G43080 52.059 1.18e-110 325
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3278g00001 K06627 - gmx:100786875 447.588