Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3277g00003 ATGTCGCTGGTCGCCGGTTCCACCTCTTCAATCGGTGGGTTTAAATTGTTGCTTGGGTTGTTATCTTGCACGGTGTGGTTTGTGGTTGAGTATGGTGAATGTGGTAGAACCCTGCAACAGCAAACACCTTCTTTATCTCCAGCTGCTCTTCCACCTGTGGTTGATGGTGATCTGCCACTACTGGCAAATGCTTTTGGGTTGAAGCATTTGCCTGCACCAATCCCATCACGTGCCAATTTCACCAAAGGAAGAGTACAATTAGAACCTCCGGGTTCTGCGTTTAAGAATATTGCCCCTGTGCATCCCATTGCCGATGCAATTCCTGCTCTCGCTCAACCACCACTGTCCCCTTTTGTTTCCGATTGTTGCAGACATGACATGGTGTGGAAACGAGGCAGTGAGATTTGCCAATGTGCTTATCCCATAAAGCTAGACTTGCTTCTTTTGAATGTCTCTCTAAACCCTGACTGGAATGTTGTTTTTCTCGATGATTTGGCCACCCAACTTGAGCTGAACACTACCCAAATTGAAATTATTAAATTTTACCTACTGAGCTTGTCGACATTGAATATATCGATGGATATCACTCCAAATAAAGGGATCAGTTTCTCCGCCAGTGAAGCCGCTAAAATAAATTCGTCGCTCTCATTGCATAAGGTTCAACTAGACAGCAGATATGTGGGCAACTACAGTGTCCTCAATATAACCTGGTTTAAAGCTCCACCTCCTTCTCAAGCTCCTACAATTGCTACATCACCTAAGAGAGCTCCTCACAGGAGAGCACCTCCAACCACATTATCGAGTACTTCTTCCAGGGGAAAGCATTCAAACTTGCCTCTTATTCTTGGAATTGTGACTGGCGTACTCTTCATTTCCATTGTATGTGTACTTACACTTTGCTTATGTACGATGAGGCCAAAAACAAAAACACCTGCCATGGAAACTGAAAAGCCAAGGACTGAAAGCACAGTGCCAGCTGTTGGGTCTCTTCCCCATCCAACCAGTACACGCTTTATTGCTTATGAAGAACTGAAAGAAGCTACCAATAATTTTGAATTAGCAAGCGTACTCGGAGAAGGAGGTTTTGGTAGAGTTTTTAAAGGTGTCTTGAATGATGGAACTGCTGTTGCAATTAAGAGGCTTACTAGTGGAGGGCAACAGGGTGACAAAGAATTTTTGGTTGAGGTTGAGATGCTTAGTCGGCTGCATCATCGTAACCTTGTAAAACTAGTGGGATACTATAGTAATCGTGAGGCATCACAAAATCTACTTTGCTATGAGCTTGTTCCGAATGGAAGTTTAGAGGCCTGGCTTCATGGTCCCCTGGGAATAAATTGCCCTTTGGATTGGGACACTAGAATGAAGATTGCCCTTGATGCTGCAAGAGGACTTGCATACCTGCACGAAGATTCACAGCCCTGTGTTATACACAGAGATTTCAAGGCATCCAACATATTACTTGAGAACAACTTTCATGCAAAAGTTGCAGATTTTGGTCTAGCTAAACAGGCACCTGAAGGCAGGGCCAATTATTTATCTACTCGAGTCATGGGCACATTTGGGTATGTAGCTCCTGAGTATGCTATGACTGGACATCTTCTTGTTAAAAGCGACGTTTATAGTTATGGGGTTGTCTTGCTGGAACTGTTGACTGGAAGGAAACCAGTGGATATGTCACAGCCAACTGGACAAGAGAACCTTGTTACTTGGGCAAGACCTATTCTTAGAGACAAGGATCGGTTGGAAGAACTTGCTGATCCAAGGCTTGGGGGAAGGTATCCAAAAGAAGATTTTGTACGTGTTTGCACTATTGCTGCAGCCTGTGTTGCTCCCGAAGCAAGCCAGCGACCTACAATGGGTGAAGTGGTACAGTCACTTAAAATGGTGCAGCGGATCACAGAAAGTCATGATCCTGTGTTAGCCTCATCCATTACACGGCCCAACATGAGACAGTCTTCTACCACGTATGAGTCGGATGGGACATCTTCAATGTTTTCTTCGGGTCCGTACTCTGGTCTAAGTGCCTTTGACCATGACAACATTTCAAGGACGGCTGTTTTCTCGGAAGATCTTCACGAAGGACGATGA 2088 0.4473 MSLVAGSTSSIGGFKLLLGLLSCTVWFVVEYGECGRTLQQQTPSLSPAALPPVVDGDLPLLANAFGLKHLPAPIPSRANFTKGRVQLEPPGSAFKNIAPVHPIADAIPALAQPPLSPFVSDCCRHDMVWKRGSEICQCAYPIKLDLLLLNVSLNPDWNVVFLDDLATQLELNTTQIEIIKFYLLSLSTLNISMDITPNKGISFSASEAAKINSSLSLHKVQLDSRYVGNYSVLNITWFKAPPPSQAPTIATSPKRAPHRRAPPTTLSSTSSRGKHSNLPLILGIVTGVLFISIVCVLTLCLCTMRPKTKTPAMETEKPRTESTVPAVGSLPHPTSTRFIAYEELKEATNNFELASVLGEGGFGRVFKGVLNDGTAVAIKRLTSGGQQGDKEFLVEVEMLSRLHHRNLVKLVGYYSNREASQNLLCYELVPNGSLEAWLHGPLGINCPLDWDTRMKIALDAARGLAYLHEDSQPCVIHRDFKASNILLENNFHAKVADFGLAKQAPEGRANYLSTRVMGTFGYVAPEYAMTGHLLVKSDVYSYGVVLLELLTGRKPVDMSQPTGQENLVTWARPILRDKDRLEELADPRLGGRYPKEDFVRVCTIAAACVAPEASQRPTMGEVVQSLKMVQRITESHDPVLASSITRPNMRQSSTTYESDGTSSMFSSGPYSGLSAFDHDNISRTAVFSEDLHEGR 695
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3277g00003 695 PANTHER OS01G0750732 PROTEIN 121 648 - -
Vium3277g00003 695 ProSiteProfiles Protein kinase domain profile. 351 640 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium3277g00003 695 MobiDBLite consensus disorder prediction 244 274 - -
Vium3277g00003 695 ProSitePatterns Protein kinases ATP-binding region signature. 357 379 IPR017441 GO:0005524
Vium3277g00003 695 MobiDBLite consensus disorder prediction 644 664 - -
Vium3277g00003 695 Gene3D Transferase(Phosphotransferase) domain 1 429 644 - -
Vium3277g00003 695 Gene3D Phosphorylase Kinase; domain 1 313 428 - -
Vium3277g00003 695 Pfam Protein tyrosine and serine/threonine kinase 352 626 IPR001245 GO:0004672|GO:0006468
Vium3277g00003 695 ProSitePatterns Serine/Threonine protein kinases active-site signature. 475 487 IPR008271 GO:0004672|GO:0006468
Vium3277g00003 695 CDD STKc_IRAK 357 627 - -
Vium3277g00003 695 SUPERFAMILY Protein kinase-like (PK-like) 327 628 IPR011009 -
Vium3277g00003 695 FunFam Receptor-like serine/threonine-protein kinase ALE2 331 428 - -
Vium3277g00003 695 FunFam Receptor-like serine/threonine-protein kinase ALE2 429 644 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3277g00003 Vium-Chr3277 9674 14883 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3277g00003 20 695 Receptor kinase-like Gene Family AT4G02010 65.763 0.0 914
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_Extensin Vium3277g00003 PK_Tyr_Ser-Thr 1.2e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3277g00003 - - gmx:100792818 1192.56