Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3276g00019 ATGGCTTACCGGCGTTGCCTTTTGATGAGAGGGAACCTTGTAGATCGGAGGTGCCATCCATCATTCAGTTATGTTCTTCATAGCGATGAAGGGAGACAGGAAAAGTCTGAGGAAAAATCATCTTCAGCAGGCGTTAGTAAGTTTGCCCAGATAAGGTCCTTTGCAAGCTCTCTTAAGGGACCATTGGGGTTCTCCCCCCTTTCCCGAGATAGATTTATTTCTCCATGCACTGGATATGGCTTCTGCCGGTATATGTCGACAGTGAATCAGGGTTCAGATAAGATTGACAGTGTCATACTCACTGATGTAGCTGATGTACTCACTGACACTACCATAGACACTATAGCTTCTCAGGCTGCCATTACTAATGAGGTTGCAATTGCTGCCGCCGATTCTTTTTTGCCTGTAATGGGCTTGCAGTACGTGATAGATGCTGTGCATTCCTACACTGGCTTAAATTGGTGGGCATCAATAGTTCTTACAACCCTGTTGATTCGAAGTGCTACAGTTCCACTCTTAATAAATCAACTTAAGGCCACTTCTAAACTTTCGTTAATGAGGCCGCACTTGGAGGAGATAAAGCAGCAGATGGACGGGATGGCTATGGATCCTGTAGCTGCTGCTAAAGGTCAGCAGCAAATGAAGAAGCTGTTTAAGGAATATGGTGTGACCCCTTTTACGCCATTGAAAGGACTCTTTATTCAAGGCCCTATTTTTGTTAGTTTTTTTCTTGCGATAACAAATATGGCTGAAAAAGTGCCGTCATTCAAGCATGGTGGAGCTTATTGGTTTACTGATCTCTCAACTCCAGATCCCTTGTACGTTTTTCCAGTTTTGGCTGCATTGTCATTCTTAATAACGGTAGAGTGTAATATGCAGGAAGGCATGGAAGGAAATCCTGTGGCTGGTACCATGAAAAAGTTCTCCAGAGGTCTTGCGGTTCTTACGGTTCCTTTCACCATGGGATTTCCAAAGGCAATATTCTGTTACTGGGTTACGTCAAATTTGTTTTCACTTGTATATGGACTTGTGCTTAAAGTTCCTGGTGTAAAGAAAACATTGGGTATTCCTGAAATACCTGTTGCTGTCCCCACCAGTGCTCCTCAATCGCCCTTTTCTATATTTCCCGCTCTAAAACAACCTACCTCTACGACAAATGAGTCAAGCCCAGTAGTACCTGATAAACCTTCAAAACATTCAAATACAAAGATATCATCTTCTTCTGTTATTAGTCAAAGGCTTAGAAGTTTAGAGAAACAAGTGAAAGGAAGAAAGAAAAATAAGTGA 1287 0.425 MAYRRCLLMRGNLVDRRCHPSFSYVLHSDEGRQEKSEEKSSSAGVSKFAQIRSFASSLKGPLGFSPLSRDRFISPCTGYGFCRYMSTVNQGSDKIDSVILTDVADVLTDTTIDTIASQAAITNEVAIAAADSFLPVMGLQYVIDAVHSYTGLNWWASIVLTTLLIRSATVPLLINQLKATSKLSLMRPHLEEIKQQMDGMAMDPVAAAKGQQQMKKLFKEYGVTPFTPLKGLFIQGPIFVSFFLAITNMAEKVPSFKHGGAYWFTDLSTPDPLYVFPVLAALSFLITVECNMQEGMEGNPVAGTMKKFSRGLAVLTVPFTMGFPKAIFCYWVTSNLFSLVYGLVLKVPGVKKTLGIPEIPVAVPTSAPQSPFSIFPALKQPTSTTNESSPVVPDKPSKHSNTKISSSSVISQRLRSLEKQVKGRKKNK 428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3276g00019 428 PANTHER OXA1 112 423 IPR001708 GO:0016020|GO:0032977
Vium3276g00019 428 NCBIfam membrane protein insertase YidC 153 343 IPR028055 -
Vium3276g00019 428 CDD 5TM_Oxa1-like 151 348 - -
Vium3276g00019 428 Pfam 60Kd inner membrane protein 154 343 IPR028055 -
Vium3276g00019 428 MobiDBLite consensus disorder prediction 378 415 - -
Vium3276g00019 428 MobiDBLite consensus disorder prediction 378 428 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3276g00019 Vium-Chr3276 255670 272247 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3276g00019 157 428 Chloroplast and Mitochondria Gene Families AT2G28800 22.022 3.34e-07 50.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3276g00019 K03217 - gmx:100817052 690.649