Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3276g00015 ATGGACAGCACCGATTCATCTTCAGGCTCTCAGCACCCACACCTCCCTCCTGGCTTTCGCTTCCACCCCACCGACGAAGAACTCGTCGTTCACTACCTCAAGAGAAAAGCTTCTTCTACACCCCTTCCCGTCGCCATCATCGCCGACGTTGATCTCTACAAGTTCGACCCTTGGGAGCTCCCAAGTAAAGCAACTTTTGGTGAACAGGAGTGGTACTTTTTCAGCCCGAGGGATCGGAAATACCCAAATGGGGTTAGACCCAACAGAGCTGCTACTTCTGGGTATTGGAAAGCAACCGGAACTGACAAACCTATACTAACATCTGATGGGCACCAGAAAGTTGGAGTTAAGAAAGCACTTGTTTTCTACGGCGGAAAGCCTCCAAAAGGGGTTAAAACCAATTGGATCATGCATGAATATAGGCTTGTTCATGATTCCTTTAATTCAACCTCAAAACCCCCTCCTCTTGTTCCTCCAAACAAGAAAAATTCCCTCAGGCTTGATGACTGGGTGTTGTGTCGAATATACAAGAAAAGCAACAGCAGCACCGTAACAAGGCCACCCTTGATGGAGCATGGAGAGGAGCTTTCAATGGAGAACATGCTTCCAACGATGTCAACTTTGTCAATGGCTAATAACAACACTCAAAACTCTAAACCTCCATCTTCGAGGAGTACGAGTTATGGAGCACTGGGACTTGAAAATGATGACAACTTCTTCGATGGAATCTTAGCCGTTGATCATCAGAGCATGCAAAGTGGTTCTGATTCTCACCTTTTCTCTCCAAACTCAAAGGGTACCAACTTTCCTATGAAACGTGCTCTCACATCACAACAACTTTGGAACGAGACAGGGTCTCCGGGGTCATCTTCTTCATGTAAGCGATTCCATGGTGATCTTAACAGTGGAAGCAGCAACGCTGAGGACAACGATTCCTTTGTTTCCTTGCTTAGCCAGTTTCCTCAGAACGCAACTTTTCAACCAAACGCGATTCATGCCTCCGTTGGGAATGGTGTGCAGAGGCAACAACAGTTTCATCTTCCTGGTATAAATTGGAACTGA 1062 0.4652 MDSTDSSSGSQHPHLPPGFRFHPTDEELVVHYLKRKASSTPLPVAIIADVDLYKFDPWELPSKATFGEQEWYFFSPRDRKYPNGVRPNRAATSGYWKATGTDKPILTSDGHQKVGVKKALVFYGGKPPKGVKTNWIMHEYRLVHDSFNSTSKPPPLVPPNKKNSLRLDDWVLCRIYKKSNSSTVTRPPLMEHGEELSMENMLPTMSTLSMANNNTQNSKPPSSRSTSYGALGLENDDNFFDGILAVDHQSMQSGSDSHLFSPNSKGTNFPMKRALTSQQLWNETGSPGSSSSCKRFHGDLNSGSSNAEDNDSFVSLLSQFPQNATFQPNAIHASVGNGVQRQQQFHLPGINWN 353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3276g00015 353 PANTHER NAC TRANSCRIPTION FACTOR 56 15 212 - -
Vium3276g00015 353 MobiDBLite consensus disorder prediction 1 22 - -
Vium3276g00015 353 Pfam No apical meristem (NAM) protein 16 142 IPR003441 GO:0003677|GO:0006355
Vium3276g00015 353 MobiDBLite consensus disorder prediction 281 308 - -
Vium3276g00015 353 SUPERFAMILY NAC domain 10 178 IPR036093 GO:0003677|GO:0006355
Vium3276g00015 353 MobiDBLite consensus disorder prediction 209 230 - -
Vium3276g00015 353 Gene3D NAC domain 24 183 IPR036093 GO:0003677|GO:0006355
Vium3276g00015 353 ProSiteProfiles NAC domain profile. 15 178 IPR003441 GO:0003677|GO:0006355
Vium3276g00015 353 FunFam NAC transcription factor 56 24 183 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3276g00015 Vium-Chr3276 147020 149078 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3276g00015 5 353 NAC Transcription Factor Family AT1G61110 54.039 6.19e-112 327
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vium3276g00015 NAM 9.7e-40 No_clan