Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3276g00010 ATGGCGGATGATGATGTCGACTTTTCGAAACTGTTCCATGGTGATGATGATGACGATGGCATGTTTTATATAGATATGAACACCGTTCAGAAGGTTCTTGATGAAGACGATAATTGTGATTTTCTGGAGAAATTTCCCGATGATTCTTCATCAAAAAATGTTTCACCCAGTGAATCTGGAACTCATGACTCATTTCAGATACAAAATGGGTCTCAAGTGTTAGAAGAACAACAGTTTTCTAGGTTGGGCTTTGCAGATTCAGTCACGAGTTGTTCTCCGTTCTGCTCAGATGGCTCGGATTCTGGTGTCAGAGGTTCATTTGGTGTATCTGATTCTGTAGCAAATTCTTGGCTTGATATTGAACCTGAAAACGAGGGACCTCAATCCCAGGCATGCTCCTCCCCAAATGCATTTCCCGGTAATCTCAGTACCCTCTCCCCAGGTGAAAGTGATGAGGTTTTCTGCACAGAGAGGACCAGAGTCTCTAAACATGAGATACCTGCTTGCAGTGTGGAATCAAGTTTCCCTGAGGCACAGTCAAAAGATATATCAATTTGTAGAGATAATTTGAATCCAAGTCCGTGGAAAGTTGAAAATGAGATCCAATTCAAGCATTTCCGAGAGGATGTTGAATTTGAAAATACTTCAATCAGTTCTATAGTTGACAATGATGATATAAATATCGAAGGTTATGTTGAAGACACCACTGGAGGAGTTTCCGGGCCACAGGAAAATGATTCGTGTACATCTTTTGAAACATTTATGGATGCTGATAGATTTTTGCATGTTGCAACTTCACCTGATTCTACTATTGGTCAAGGTTCTCATGGTTCCAGTGATTTCATTGACTACCATGGATCTTCAACTTATTACGAGGGAATGCATAGTGGACCCTTTGTTGCTGACTCTTCTCTTGCTTATGATTCATACGTACCATATGAAGACCATTATCAGGATGCTAAGTTCAATGTAGGCCAATCGGTGAGACAAACACCTGATATTTTTTCTTCTATAGGGTCTCAGGCTTACCAATTTTATGAGAATGAGGATAATTATGCAGTTATATCTGGGATATCCAATCAATATCAAGATATCAATGGTAGAATTGCTAGTTTTCAAGAAAATGTGGACAATTTGAATTTACAAGCTGCAAATATATCTTGGCCCCATGCCCAGGCACTAATTACCAGTGAGAACCAGTTTGGTTGTGTTAAGAGAGAAGGAGGGGTTCGACATAAACTTGCTGATTCTCATCTTTCAAAAGGAAAATTTGAGAATTTCCATGTCGAGGAAGACCCTGATGTTTGCATTATTGAAGACATCAGTCATCCTGCTCCGACAAGTCTATCTACAATCAGTGGGAATTCGTCTAATATTTCTCAATCGTCTAGATATGCTGATTCTCAGTCTTACATGGCTGGAAGTACTAGGCTGAAGGCATGTGATGAGCGTAATATATTACGGGTTGCATTGCAGGATCTATCTCAGCCAAGGTCAGAAGTTAGTCTACCAGAAGGGTTGTTGGCAGTTCCTCTCTTAAGGCATCAGAGAATTGCTTTATCATGGATGGTTCAAAAGGAAGCATCAAGTTTTAATTGCTCAGGAGGAATTCTTGCAGATGATCAGGGACTTGGAAAAACAGTATCAACTATTGCATTAATATTAAAGGAAAGACCTCCATTACCTAATGGGGGCACCAATGCCCACAAAAGTGAATTGGATTCTCTGAATCTGGATGTGGATGATGACGTGCTTCCTCAGAACGGTAGAGTAAAGGAAGAATCTAATACTTGTGAGGATGAGTCAAGTAGACATCCAATCAAGAGTATGAATTTGCAAAACCAAGCAAAGGGAAGGCCATCTGCCGGGACCCTTATTGTTTGTCCCACTAGTGTCCTACGTCAATGGGCAGAGGAGTTGCGTAGCAAGGTAACTAGTCAAACAAAAATCTCTGTGCTAGTATACCATGGAAGCAATCGGACAAAAGATCCTTATGAGGTTGCAAAGTATGATGTTGTTCTAACAACTTATTCCATTGTCAGCATGGAGGTTCCTAAGCAGCCTTCAGCTGACAAAGATGATGAGGAAAAAGGAAATGTTGAAGATCATGCTGTACCGAGTAGGAAAAGAAAAAGTCCCTCTAATTCTAGTAAAAATGGCAAGAAGAGATCAGATGGAACAGTTCTTGAAACTAATGCTCGCCCGCTTGCAAAGGTGGCATGGTTTAGGGTTGTCTTGGATGAGGCACAAAGTATAAAGAATCACAAAACTCAAGTTGCAAGGGCCTGTTGGGGTCTTCGTGCTAAGCGAAGATGGTGTTTGTCAGGGACTCCTATCCAGAATGCAATTGACGATCTCTACAGTTACTTCAGATTTCTAAGATATGACCCTTATGATGTCTATACATCATTTTATTCTAAAATTAAGAACCGAATTAGTAGAGATCCAGCAAACGGATATAGAAAGCTACAAGCTGTCTTGAAGACTATAATGTTACGCCGGACCAAAGGTACACTTCTTGACGGGGAACCTATTATTTCCTTGCCGCCTAAATATATAGAGCTGAAAAAGGTTGATTTTTCAACTGAGGAACGTGATTTCTATTACAAACTAGAGGCTGATTCACGTGCACAGTTCCAGGAATATGCTGATGCTGGCACTGTCAAGCAAAATTATGTCAACATTTTGCTGATGCTCCTGCGCCTTAGACAAGCTTGTGATCACCCTTTGCTTGTCAAGCGATACAATTCAAACTCTCTATGGAGATATTCGGTTGAGATGGCAAAGACACTTCCTCAGGAAAAACAAATCTCTCTTCTGCAATGTTTAGAGGCTTCTTTGGCCCTCTGTAGCATTTGTAACGATCCTCCGGAAGATGCATTTGTTTCAGTTTGTGGTCATGTTTTCTGTAACCAATGCATATGTGAACATCTTACTGGTGATGACAACCAGTGCCCTGCTGCAAATTGCAAAATTCGACTGAGCACATCTAGGGTATTCTCAAAAGTCACTCTGAACAATTGTCTTTCTGACCAGGGTTGTGATAATTCACCTGGTTGCCCTGCTTCTGAAGTGGAAGAATTTGAGCCTTGGTCTCAAAGTCAGTCATATGAATCTTCAAAAATAAAGGCTGCACTTGAGGTTTTGAAATCACTGCGTAAGCCACAGTCCTATACCTCAAAAAGCACTTCTGAGAATAGAACTTTGAGGGAAGATAATGGTTGCCCTGGGAACCCCTCGGATGTTGAAAATGGGAAATCCTCAATTAATTCTCATGAGTGTCAAAATTTGTCTGATGAGAATAGATACCATAGTGATTCAGTTACTGTCGTAGGGGAGAAAGCTATAGTGTTTTCTCAGTGGACGAGGATGCTAGATTTGCTTGAAGAGTGTCTCAAGAAATCTTCGATTAATTATAGAAGGCTTGATGGAACAATGTCGGTTGTTGCCAGAGATAAAGCTGTTAAAGATTTTAACACTCTTCCCGAGGTATCAGTTATAATTATGTCTTTGAAGGCTGCCAGTCTTGGTCTAAACTTGGTGGTAGCTTGCCATGTTCTTATGCTAGATTTATGGTGGAATCCTACAACTGAAGACCAAGCAATAGATAGAGCACATCGAATTGGGCAGACTCGTCCTGTGACTGTCTTGAGATTAACTGTGAAAGATACAGTTGAAGATCGAATTCTAGCTCTGCAGCAAAAGAAGAGAACGATGGTTGCATCTGCCTTTGGGGAGGATGGAACTGGTGATCGTCAGAGTCGCCTCACTGTGGATGATTTAAAATATTTGTTCATGATGTGA 3804 0.4083 MADDDVDFSKLFHGDDDDDGMFYIDMNTVQKVLDEDDNCDFLEKFPDDSSSKNVSPSESGTHDSFQIQNGSQVLEEQQFSRLGFADSVTSCSPFCSDGSDSGVRGSFGVSDSVANSWLDIEPENEGPQSQACSSPNAFPGNLSTLSPGESDEVFCTERTRVSKHEIPACSVESSFPEAQSKDISICRDNLNPSPWKVENEIQFKHFREDVEFENTSISSIVDNDDINIEGYVEDTTGGVSGPQENDSCTSFETFMDADRFLHVATSPDSTIGQGSHGSSDFIDYHGSSTYYEGMHSGPFVADSSLAYDSYVPYEDHYQDAKFNVGQSVRQTPDIFSSIGSQAYQFYENEDNYAVISGISNQYQDINGRIASFQENVDNLNLQAANISWPHAQALITSENQFGCVKREGGVRHKLADSHLSKGKFENFHVEEDPDVCIIEDISHPAPTSLSTISGNSSNISQSSRYADSQSYMAGSTRLKACDERNILRVALQDLSQPRSEVSLPEGLLAVPLLRHQRIALSWMVQKEASSFNCSGGILADDQGLGKTVSTIALILKERPPLPNGGTNAHKSELDSLNLDVDDDVLPQNGRVKEESNTCEDESSRHPIKSMNLQNQAKGRPSAGTLIVCPTSVLRQWAEELRSKVTSQTKISVLVYHGSNRTKDPYEVAKYDVVLTTYSIVSMEVPKQPSADKDDEEKGNVEDHAVPSRKRKSPSNSSKNGKKRSDGTVLETNARPLAKVAWFRVVLDEAQSIKNHKTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDPYDVYTSFYSKIKNRISRDPANGYRKLQAVLKTIMLRRTKGTLLDGEPIISLPPKYIELKKVDFSTEERDFYYKLEADSRAQFQEYADAGTVKQNYVNILLMLLRLRQACDHPLLVKRYNSNSLWRYSVEMAKTLPQEKQISLLQCLEASLALCSICNDPPEDAFVSVCGHVFCNQCICEHLTGDDNQCPAANCKIRLSTSRVFSKVTLNNCLSDQGCDNSPGCPASEVEEFEPWSQSQSYESSKIKAALEVLKSLRKPQSYTSKSTSENRTLREDNGCPGNPSDVENGKSSINSHECQNLSDENRYHSDSVTVVGEKAIVFSQWTRMLDLLEECLKKSSINYRRLDGTMSVVARDKAVKDFNTLPEVSVIIMSLKAASLGLNLVVACHVLMLDLWWNPTTEDQAIDRAHRIGQTRPVTVLRLTVKDTVEDRILALQQKKRTMVASAFGEDGTGDRQSRLTVDDLKYLFMM 1267
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3276g00010 1267 ProSitePatterns Zinc finger RING-type signature. 965 974 IPR017907 -
Vium3276g00010 1267 Pfam Helicase conserved C-terminal domain 1109 1209 IPR001650 -
Vium3276g00010 1267 MobiDBLite consensus disorder prediction 120 145 - -
Vium3276g00010 1267 SMART ring_2 950 988 IPR001841 -
Vium3276g00010 1267 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 842 1266 IPR027417 -
Vium3276g00010 1267 CDD SF2_C_SNF 1112 1219 - -
Vium3276g00010 1267 Gene3D - 481 571 IPR038718 -
Vium3276g00010 1267 ProSiteProfiles Zinc finger RING-type profile. 950 989 IPR001841 -
Vium3276g00010 1267 SMART ultradead3 508 811 IPR014001 -
Vium3276g00010 1267 Coils Coil 362 382 - -
Vium3276g00010 1267 FunFam SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-like protein 605 693 - -
Vium3276g00010 1267 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1103 1262 IPR001650 -
Vium3276g00010 1267 MobiDBLite consensus disorder prediction 1057 1073 - -
Vium3276g00010 1267 MobiDBLite consensus disorder prediction 44 65 - -
Vium3276g00010 1267 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 322 1266 - -
Vium3276g00010 1267 MobiDBLite consensus disorder prediction 1057 1089 - -
Vium3276g00010 1267 Pfam Zinc finger, C3HC4 type (RING finger) 950 986 IPR018957 GO:0046872
Vium3276g00010 1267 SMART helicmild6 1126 1209 IPR001650 -
Vium3276g00010 1267 MobiDBLite consensus disorder prediction 687 709 - -
Vium3276g00010 1267 SUPERFAMILY RING/U-box 947 1006 - -
Vium3276g00010 1267 Pfam SNF2-related domain 527 911 IPR000330 GO:0005524|GO:0140658
Vium3276g00010 1267 Gene3D - 849 1267 IPR027417 -
Vium3276g00010 1267 CDD DEXDc_SHPRH-like 512 834 - -
Vium3276g00010 1267 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 623 796 IPR014001 -
Vium3276g00010 1267 Gene3D - 721 835 IPR038718 -
Vium3276g00010 1267 Gene3D - 606 697 IPR038718 -
Vium3276g00010 1267 MobiDBLite consensus disorder prediction 48 65 - -
Vium3276g00010 1267 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 501 834 IPR027417 -
Vium3276g00010 1267 FunFam SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-like protein 717 846 - -
Vium3276g00010 1267 MobiDBLite consensus disorder prediction 685 729 - -
Vium3276g00010 1267 MobiDBLite consensus disorder prediction 122 145 - -
Vium3276g00010 1267 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 935 1001 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3276g00010 Vium-Chr3276 83849 92320 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3276g00010 395 1266 RAD5 or RAD16-like Gene Family AT1G61140 58.518 0.0 948
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Vium3276g00010 SNF2_N 7.8e-68 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3276g00010 - - gmx:100802436 1574.3