Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3276g00009 ATGGCGGATGATGATGTCGACTTTTCGAAACTGTTCCATGGTGATGATGATGACGATGGCATGTTTTATATAGATATGAACACCGTTCAGAAGGTTCTTGATGAAGACGATAATTGTGATTTTCTGGAGAAATTTCCCGATGATTCTTCATCAAAAAATGTTTCACCCAGTGAATCTGGAACTCATGACTCATTTCAGATACAAAATGGGTCTCAAGTGTTAGAAGAACAACAGTTTTCTAGGTTGGGCTTTGCAGATTCAGTCACGAGTTGTTCTCCGTTCTGCTCAGATGGCTCGGATTCTGGTGTCAGAGGTTCATTTGGTGTATCTGATTCTGTAGCAAATTCTTGGCTTGATATTGAACCTGAAAACGAGGGACCTCAATCCCAGGCATGCTCCTCCCCAAATGCATTTCCCGGTAATCTCAGTACCCTCTCCCCAGGTGAAAGTGATGAGGTTTTCTGCACAGAGAGGACCAGAGTCTCTAAACATGAGATACCTGCTTGCAGTGTGGAATCAAGTTTCCCTGAGGCACAGTCAAAAGATATATCAATTTGTAGAGATAATTTGAATCCAAGTCCGTGGAAAGTTGAAAATGAGATCCAATTCAAGCATTTCCGAGAGGATGTTGAATTTGAAAATACTTCAATCAGTTCTATAGTTGACAATGATGATATAAATATCGAAGGTTATGTTGAAGACACCACTGGAGGAGTTTCCGGGCCACAGGAAAATGATTCGTGTACATCTTTTGAAACATTTATGGATGCTGATAGATTTTTGCATGTTGCAACTTCACCTGATTCTACTATTGGTCAAGGTTCTCATGGTTCCAGTGATTTCATTGACTACCATGGATCTTCAACTTATTACGAGGGAATGCATAGTGGACCCTTTGTTGCTGACTCTTCTCTTGGTATTTTTCCAAATGGTTTTTGCTCTCAATTGCCAAATGACGAAATGATGAATAACATGAAGGCCAAAAGTGTGGAGTTAAATTCTGATATTTCATCTTATGATTCATACGTACCATATGAAGACCATTATCAGGATGCTAAGTTCAATGTAGGCCAATCGGTGAGACAAACACCTGATATTTTTTCTTCTATAGGGTCTCAGGCTTACCAATTTTATGAGAATGAGGATAATTATGCAGTTATATCTGGGATATCCAATCAATATCAAGATATCAATGGTAGAATTGCTAGTTTTCAAGAAAATGTGGACAATTTGAATTTACAAGCTGCAAATATATCTTGGCCCCATGCCCAGGCACTAATTACCAGTGAGAACCAGTTTGGTTGTGTTAAGAGAGAAGGAGGGGTTCGACATAAACTTGCTGATTCTCATCTTTCAAAAGGAAAATTTGAGAATTTCCATGTCGAGGAAGACCCTGATGTTTGCATTATTGAAGACATCAGTCATCCTGCTCCGACAAGTCTATCTACAATCAGTGGGAATTCGTCTAATATTTCTCAATCGTCTAGATATGCTGATTCTCAGTCTTACATGGCTGGAAGTACTAGGCTGAAGGCATGTGATGAGCGTAATATATTACGGGTTGCATTGCAGGATCTATCTCAGCCAAGGTCAGAAGTTAGTCTACCAGAAGGGTTGTTGGCAGTTCCTCTCTTAAGGCATCAGAGAATTGCTTTATCATGGATGGTTCAAAAGGAAGCATCAAGTTTTAATTGCTCAGGAGGAATTCTTGCAGATGATCAGGGACTTGGAAAAACAGTATCAACTATTGCATTAATATTAAAGGAAAGACCTCCATTACCTAATGGGGGCACCAATGCCCACAAAAGTGAATTGGATTCTCTGAATCTGGATGTGGATGATGACGTGCTTCCTCAGAACGGTAGAGTAAAGGAAGAATCTAATACTTGTGAGGATGAGTCAAGTAGACATCCAATCAAGAGTATGAATTTGCAAAACCAAGCAAAGGGAAGGCCATCTGCCGGGACCCTTATTGTTTGTCCCACTAGTGTCCTACGTCAATGGGCAGAGGAGTTGCGTAGCAAGGTAACTAGTCAAACAAAAATCTCTGTGCTAGTATACCATGGAAGCAATCGGACAAAAGATCCTTATGAGGTTGCAAAGTATGATGTTGTTCTAACAACTTATTCCATTGTCAGCATGGAGGTTCCTAAGCAGCCTTCAGCTGACAAAGATGATGAGGAAAAAGGAAATGTTGAAGATCATGCTGTACCGAGTAGGAAAAGAAAAAGTCCCTCTAATTCTAGTAAAAATGGCAAGAAGAGATCAGATGGAACAGTTCTTGAAACTAATGCTCGCCCGCTTGCAAAGGTGGCATGGTTTAGGGTTGTCTTGGATGAGGCACAAAGTATAAAGAATCACAAAACTCAAGTTGCAAGGGCCTGTTGGGGTCTTCGTGCTAAGCGAAGATGGTGTTTGTCAGGGACTCCTATCCAGAATGCAATTGACGATCTCTACAGTTACTTCAGATTTCTAAGATATGACCCTTATGATGTCTATACATCATTTTATTCTAAAATTAAGAACCGAATTAGTAGAGATCCAGCAAACGGATATAGAAAGCTACAAGCTGTCTTGAAGACTATAATGTTACGCCGGACCAAAGGTACACTTCTTGACGGGGAACCTATTATTTCCTTGCCGCCTAAATATATAGAGCTGAAAAAGGTTGATTTTTCAACTGAGGAACGTGATTTCTATTACAAACTAGAGGCTGATTCACGTGCACAGTTCCAGGAATATGCTGATGCTGGCACTGTCAAGCAAAATTATGTCAACATTTTGCTGATGCTCCTGCGCCTTAGACAAGCTTGTGATCACCCTTTGCTTGTCAAGCGATACAATTCAAACTCTCTATGGAGATATTCGGTTGAGATGGCAAAGACACTTCCTCAGGAAAAACAAATCTCTCTTCTGCAATGTTTAGAGGCTTCTTTGGCCCTCTGTAGCATTTGTAACGATCCTCCGGAAGATGCATTTGTTTCAGTTTGTGGTCATGTTTTCTGTAACCAATGCATATGTGAACATCTTACTGGTGATGACAACCAGTGCCCTGCTGCAAATTGCAAAATTCGACTGAGCACATCTAGGGTATTCTCAAAAGTCACTCTGAACAATTGTCTTTCTGACCAGGGTTGTGATAATTCACCTGGTTGCCCTGCTTCTGAAGTGGAAGAATTTGAGCCTTGGTCTCAAAGTCAGTCATATGAATCTTCAAAAATAAAGGCTGCACTTGAGGTTTTGAAATCACTGCGTAAGCCACAGTCCTATACCTCAAAAAGCACTTCTGAGAATAGAACTTTGAGGGAAGATAATGGTTGCCCTGGGAACCCCTCGGATGTTGAAAATGGGAAATCCTCAATTAATTCTCATGAGTGTCAAAATTTGTCTGATGAGAATAGATACCATAGTGATTCAGTTACTGTCGTAGGGGAGAAAGCTATAGTGTTTTCTCAGTGGACGAGGATGCTAGATTTGCTTGAAGAGTGTCTCAAGAAATCTTCGATTAATTATAGAAGGCTTGATGGAACAATGTCGGTTGTTGCCAGAGATAAAGCTGTTAAAGATTTTAACACTCTTCCCGAGGTATCAGTTATAATTATGTCTTTGAAGGCTGCCAGTCTTGGTCTAAACTTGGTGGTAGCTTGCCATGTTCTTATGCTAGATTTATGGTGGAATCCTACAACTGAAGACCAAGCAATAGATAGAGCACATCGAATTGGGCAGACTCGTCCTGTGACTGTCTTGAGATTAACTGTGAAAGATACAGTTGAAGATCGAATTCTAGCTCTGCAGCAAAAGAAGAGAACGATGGTTGCATCTGCCTTTGGGGAGGATGGAACTGGTGATCGTCAGAGTCGCCTCACTGTGGATGATTTAAAATATTTGTTCATGATGTGA 3900 0.4062 MADDDVDFSKLFHGDDDDDGMFYIDMNTVQKVLDEDDNCDFLEKFPDDSSSKNVSPSESGTHDSFQIQNGSQVLEEQQFSRLGFADSVTSCSPFCSDGSDSGVRGSFGVSDSVANSWLDIEPENEGPQSQACSSPNAFPGNLSTLSPGESDEVFCTERTRVSKHEIPACSVESSFPEAQSKDISICRDNLNPSPWKVENEIQFKHFREDVEFENTSISSIVDNDDINIEGYVEDTTGGVSGPQENDSCTSFETFMDADRFLHVATSPDSTIGQGSHGSSDFIDYHGSSTYYEGMHSGPFVADSSLGIFPNGFCSQLPNDEMMNNMKAKSVELNSDISSYDSYVPYEDHYQDAKFNVGQSVRQTPDIFSSIGSQAYQFYENEDNYAVISGISNQYQDINGRIASFQENVDNLNLQAANISWPHAQALITSENQFGCVKREGGVRHKLADSHLSKGKFENFHVEEDPDVCIIEDISHPAPTSLSTISGNSSNISQSSRYADSQSYMAGSTRLKACDERNILRVALQDLSQPRSEVSLPEGLLAVPLLRHQRIALSWMVQKEASSFNCSGGILADDQGLGKTVSTIALILKERPPLPNGGTNAHKSELDSLNLDVDDDVLPQNGRVKEESNTCEDESSRHPIKSMNLQNQAKGRPSAGTLIVCPTSVLRQWAEELRSKVTSQTKISVLVYHGSNRTKDPYEVAKYDVVLTTYSIVSMEVPKQPSADKDDEEKGNVEDHAVPSRKRKSPSNSSKNGKKRSDGTVLETNARPLAKVAWFRVVLDEAQSIKNHKTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDPYDVYTSFYSKIKNRISRDPANGYRKLQAVLKTIMLRRTKGTLLDGEPIISLPPKYIELKKVDFSTEERDFYYKLEADSRAQFQEYADAGTVKQNYVNILLMLLRLRQACDHPLLVKRYNSNSLWRYSVEMAKTLPQEKQISLLQCLEASLALCSICNDPPEDAFVSVCGHVFCNQCICEHLTGDDNQCPAANCKIRLSTSRVFSKVTLNNCLSDQGCDNSPGCPASEVEEFEPWSQSQSYESSKIKAALEVLKSLRKPQSYTSKSTSENRTLREDNGCPGNPSDVENGKSSINSHECQNLSDENRYHSDSVTVVGEKAIVFSQWTRMLDLLEECLKKSSINYRRLDGTMSVVARDKAVKDFNTLPEVSVIIMSLKAASLGLNLVVACHVLMLDLWWNPTTEDQAIDRAHRIGQTRPVTVLRLTVKDTVEDRILALQQKKRTMVASAFGEDGTGDRQSRLTVDDLKYLFMM 1299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3276g00009 1299 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 967 1033 IPR013083 -
Vium3276g00009 1299 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 362 1298 - -
Vium3276g00009 1299 MobiDBLite consensus disorder prediction 120 145 - -
Vium3276g00009 1299 SMART helicmild6 1158 1241 IPR001650 -
Vium3276g00009 1299 CDD SF2_C_SNF 1144 1251 - -
Vium3276g00009 1299 ProSiteProfiles Zinc finger RING-type profile. 982 1021 IPR001841 -
Vium3276g00009 1299 Coils Coil 394 414 - -
Vium3276g00009 1299 FunFam SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-like protein 749 878 - -
Vium3276g00009 1299 MobiDBLite consensus disorder prediction 1089 1105 - -
Vium3276g00009 1299 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1135 1294 IPR001650 -
Vium3276g00009 1299 FunFam SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-like protein 637 725 - -
Vium3276g00009 1299 MobiDBLite consensus disorder prediction 44 65 - -
Vium3276g00009 1299 MobiDBLite consensus disorder prediction 1089 1121 - -
Vium3276g00009 1299 SMART ultradead3 540 843 IPR014001 -
Vium3276g00009 1299 Gene3D - 881 1299 IPR027417 -
Vium3276g00009 1299 MobiDBLite consensus disorder prediction 719 741 - -
Vium3276g00009 1299 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 874 1298 IPR027417 -
Vium3276g00009 1299 ProSitePatterns Zinc finger RING-type signature. 997 1006 IPR017907 -
Vium3276g00009 1299 Gene3D - 638 729 IPR038718 -
Vium3276g00009 1299 Gene3D - 753 867 IPR038718 -
Vium3276g00009 1299 SMART ring_2 982 1020 IPR001841 -
Vium3276g00009 1299 Pfam Helicase conserved C-terminal domain 1141 1241 IPR001650 -
Vium3276g00009 1299 CDD DEXDc_SHPRH-like 544 866 - -
Vium3276g00009 1299 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 655 828 IPR014001 -
Vium3276g00009 1299 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 533 866 IPR027417 -
Vium3276g00009 1299 MobiDBLite consensus disorder prediction 48 65 - -
Vium3276g00009 1299 MobiDBLite consensus disorder prediction 717 761 - -
Vium3276g00009 1299 SUPERFAMILY RING/U-box 979 1038 - -
Vium3276g00009 1299 MobiDBLite consensus disorder prediction 122 145 - -
Vium3276g00009 1299 Pfam Zinc finger, C3HC4 type (RING finger) 982 1018 IPR018957 GO:0046872
Vium3276g00009 1299 Gene3D - 513 603 IPR038718 -
Vium3276g00009 1299 Pfam SNF2-related domain 559 943 IPR000330 GO:0005524|GO:0140658
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3276g00009 Vium-Chr3276 83849 92320 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3276g00009 427 1298 RAD5 or RAD16-like Gene Family AT1G61140 58.518 0.0 948
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Vium3276g00009 SNF2_N 8.2e-68 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3276g00009 - - gmx:100802436 1998.02