Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3276g00004 ATGGATCTTAGCAACAACCAGATTGGAGGGGCCATTCCATCCAGTTTGTCCCCTACTTTAAGGAACTTGTCACTCTCAGCTAATAAATTAAATGGAAGCATTCCAGATGCCTTGTCCTCATTAACTCAATTGTCAGACTTGTCATTAAAAGATAACCATCTGAATGGAGAAATTCCAGATGCATTTCTACACTTTACTGATTTGATAAATATGGATCTGTCTGGAAACAACTTGAGTGGTCAGCTGCCTCCCTCAATGGGGAATTTGTCATCTCTTAACACATTACATTTGCAGAACAATCAACTTTCTGGGACCCTTTTTGTTTTGCAGGACCTCCCTCTTCAGGATCTGAATATAGAGAACAATATATTCTCTGGGCCAATTCCTCCGGAGTTGTTGAGTATCCCTAATTTCAGAAAAGATGGGAATCCGTTTAATACTACTATCATTCCATCACCTCCAGCTGCTTCCCCTGCACCTCTTGCTATGGCTCCCTCCCCAGAAATATCACCTTGGAAAGTGGCCAATAGTCCATCTGCTACCACCATAAAAGCTCCAATACCTGCAACTGCTGAGAGGTCTTTCAGAACCAAGAAATTAGTTTGGATTGTTGGTGCAGGCTTTTTAATATTTATTGCATTAGGAGTTTGTCTTCTTATGTTGTGGTGCTTTAAGAGAAGACCAGAGAACAGGAGTTATAAGAAACACAACATGAACGTGTATAAAAGATCTTTGCATAAACGTACAAGCAGTGACTCCCCTTTTGAAGCAACTGATGATGAGGAGAAAGGATGGGGTTCAAAACTTCCAGCCTTGCAGCCAGCGCCACCACATAAACTCCCAATCATTCCTGGAGAGAATTTAATCATTAATCGAGCTATCTTTGGTGAAGAAACCAAAAGACAAATTGTAACAAATTCCATCAAAGTTTATACTGTTGCATCACTTCAGCAATACACAAATAGTTTTTCCCTAGAAAATTATATTGGCGAAGGCATGCTTGGCCCTGTTTATAGGGCTGAACTCCCTGATGGAAAGTTACTGGCAGTCAGGAAGTTGAATGCTACTGCTTTGATTGACCTAAACCACGAACAGTTTCTTCAATTAGCTTCCAGTGTCTCCAAAATTCAACATGCTAATATTGTAAAGTTTATGGGCTACTGTGCCGAGCATAGCCAACACTTACTTGTATATGAGTATTGTAGTAATGGCACCCTTCATGATGCATTGCATACAGATGCTAAACTTCAGATTAACCTTTCATGGGATGATCGCATTCAAGTGTCACTTGGAGCGGCAAGAGCTTTAGAGTATTTGCATGAGTACTTTCAGCCACCTATTGTGCACGGAAACTTTACATCTGCTAACGTACTACTCAATGACAAGTTGGAAGTTCAGGTCTCGGATTGTGGATTAGGTTCTTTACTATCTTCAGGCTCCGCAAGTCGGTTGTCGGGACACCAACTCACAGCTAATGGTTACAGTGCCCCAGAATACGAGAATGGAAGTTATACACTTCAAAGTGATGTCTTTAGCTTTGGAGTTGTAATGCTAGAGCTCCTCACTGGACGAAAATCCTATGACAGCTCACTGGCTCGTGGAGAGCAGTTTTTGGTGAGATGGGCAGTCCCTCAACTCCATGACATAGATGCATTGTCAAAAATGGTTGACCCTTCTTTAAATGCAGAATATCCTAAGAAATCCTTGTCACGTTTTGCAGACATTATTTCCTCATGTATACAGCATGGACCTGAATTTCGACCAGCAATGTCAGAAATTGTTCAGGATCTCTTGCGAATGATGTAG 1806 0.4131 MDLSNNQIGGAIPSSLSPTLRNLSLSANKLNGSIPDALSSLTQLSDLSLKDNHLNGEIPDAFLHFTDLINMDLSGNNLSGQLPPSMGNLSSLNTLHLQNNQLSGTLFVLQDLPLQDLNIENNIFSGPIPPELLSIPNFRKDGNPFNTTIIPSPPAASPAPLAMAPSPEISPWKVANSPSATTIKAPIPATAERSFRTKKLVWIVGAGFLIFIALGVCLLMLWCFKRRPENRSYKKHNMNVYKRSLHKRTSSDSPFEATDDEEKGWGSKLPALQPAPPHKLPIIPGENLIINRAIFGEETKRQIVTNSIKVYTVASLQQYTNSFSLENYIGEGMLGPVYRAELPDGKLLAVRKLNATALIDLNHEQFLQLASSVSKIQHANIVKFMGYCAEHSQHLLVYEYCSNGTLHDALHTDAKLQINLSWDDRIQVSLGAARALEYLHEYFQPPIVHGNFTSANVLLNDKLEVQVSDCGLGSLLSSGSASRLSGHQLTANGYSAPEYENGSYTLQSDVFSFGVVMLELLTGRKSYDSSLARGEQFLVRWAVPQLHDIDALSKMVDPSLNAEYPKKSLSRFADIISSCIQHGPEFRPAMSEIVQDLLRMM 601
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3276g00004 601 ProSiteProfiles Protein kinase domain profile. 323 601 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium3276g00004 601 Pfam Protein tyrosine and serine/threonine kinase 325 597 IPR001245 GO:0004672|GO:0006468
Vium3276g00004 601 FunFam Protein STRUBBELIG-RECEPTOR FAMILY 8 292 400 - -
Vium3276g00004 601 SUPERFAMILY L domain-like 2 137 - -
Vium3276g00004 601 SUPERFAMILY Protein kinase-like (PK-like) 303 597 IPR011009 -
Vium3276g00004 601 Gene3D Ribonuclease Inhibitor 1 157 IPR032675 -
Vium3276g00004 601 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 2 599 IPR046959 -
Vium3276g00004 601 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 401 601 - -
Vium3276g00004 601 Gene3D Transferase(Phosphotransferase) domain 1 401 601 - -
Vium3276g00004 601 FunFam protein STRUBBELIG-RECEPTOR FAMILY 3 1 156 - -
Vium3276g00004 601 Gene3D Phosphorylase Kinase; domain 1 288 400 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3276g00004 Vium-Chr3276 5453 11623 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3276g00004 1 601 Strubbelig Receptor Gene Family AT4G03390 50.975 0.0 605
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-V Vium3276g00004 PK_Tyr_Ser-Thr 1.8e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3276g00004 - - pvu:PHAVU_002G224200g 1045.8