Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3276g00003 ATGATGTGGTTACCATATTTGAAAGGCTGTTGGACAATCTCTCAAAGCGTGGATCTTAGCAACAACCAGATTGGAGGGGCCATTCCATCCAGTTTGTCCCCTACTTTAAGGAACTTGTCACTCTCAGCTAATAAATTAAATGGAAGCATTCCAGATGCCTTGTCCTCATTAACTCAATTGTCAGACTTGTCATTAAAAGATAACCATCTGAATGGAGAAATTCCAGATGCATTTCTACACTTTACTGATTTGATAAATATGGATCTGTCTGGAAACAACTTGAGTGGTCAGCTGCCTCCCTCAATGGGGAATTTGTCATCTCTTAACACATTACATTTGCAGAACAATCAACTTTCTGGGACCCTTTTTGTTTTGCAGGACCTCCCTCTTCAGGATCTGAATATAGAGAACAATATATTCTCTGGGCCAATTCCTCCGGAGTTGTTGAGTATCCCTAATTTCAGAAAAGATGGGAATCCGTTTAATACTACTATCATTCCATCACCTCCAGCTGCTTCCCCTGCACCTCTTGCTATGGCTCCCTCCCCAGAAATATCACCTTGGAAAGTGGCCAATAGTCCATCTGCTACCACCATAAAAGCTCCAATACCTGCAACTGCTGAGAGGTCTTTCAGAACCAAGAAATTAGTTTGGATTGTTGGTGCAGGCTTTTTAATATTTATTGCATTAGGAGTTTGTCTTCTTATGTTGTGGTGCTTTAAGAGAAGACCAGAGAACAGGAGTTATAAGAAACACAACATGAACGTGTATAAAAGATCTTTGCATAAACGTACAAGCAGTGACTCCCCTTTTGAAGCAACTGATGATGAGGAGAAAGGATGGGGTTCAAAACTTCCAGCCTTGCAGCCAGCGCCACCACATAAACTCCCAATCATTCCTGGAGAGAATTTAATCATTAATCGAGCTATCTTTGGTGAAGAAACCAAAAGACAAATTGTAACAAATTCCATCAAAGTTTATACTGTTGCATCACTTCAGCAATACACAAATAGTTTTTCCCTAGAAAATTATATTGGCGAAGGCATGCTTGGCCCTGTTTATAGGGCTGAACTCCCTGATGGAAAGTTACTGGCAGTCAGGAAGTTGAATGCTACTGCTTTGATTGACCTAAACCACGAACAGTTTCTTCAATTAGCTTCCAGTGTCTCCAAAATTCAACATGCTAATATTGTAAAGTTTATGGGCTACTGTGCCGAGCATAGCCAACACTTACTTGTATATGAGTATTGTAGTAATGGCACCCTTCATGATGCATTGCATACAGATGCTAAACTTCAGATTAACCTTTCATGGGATGATCGCATTCAAGTGTCACTTGGAGCGGCAAGAGCTTTAGAGTATTTGCATGAGTACTTTCAGCCACCTATTGTGCACGGAAACTTTACATCTGCTAACGTACTACTCAATGACAAGTTGGAAGTTCAGGTCTCGGATTGTGGATTAGGTTCTTTACTATCTTCAGGCTCCGCAAGTCGGTTGTCGGGACACCAACTCACAGCTAATGGTTACAGTGCCCCAGAATACGAGAATGGAAGTTATACACTTCAAAGTGATGTCTTTAGCTTTGGAGTTGTAATGCTAGAGCTCCTCACTGGACGAAAATCCTATGACAGCTCACTGGCTCGTGGAGAGCAGTTTTTGGTGAGATGGGCAGTCCCTCAACTCCATGACATAGATGCATTGTCAAAAATGGTTGACCCTTCTTTAAATGCAGAATATCCTAAGAAATCCTTGTCACGTTTTGCAGACATTATTTCCTCATGTATACAGCATGGACCTGAATTTCGACCAGCAATGTCAGAAATTGTTCAGGATCTCTTGCGAATGATGTAG 1854 0.4132 MMWLPYLKGCWTISQSVDLSNNQIGGAIPSSLSPTLRNLSLSANKLNGSIPDALSSLTQLSDLSLKDNHLNGEIPDAFLHFTDLINMDLSGNNLSGQLPPSMGNLSSLNTLHLQNNQLSGTLFVLQDLPLQDLNIENNIFSGPIPPELLSIPNFRKDGNPFNTTIIPSPPAASPAPLAMAPSPEISPWKVANSPSATTIKAPIPATAERSFRTKKLVWIVGAGFLIFIALGVCLLMLWCFKRRPENRSYKKHNMNVYKRSLHKRTSSDSPFEATDDEEKGWGSKLPALQPAPPHKLPIIPGENLIINRAIFGEETKRQIVTNSIKVYTVASLQQYTNSFSLENYIGEGMLGPVYRAELPDGKLLAVRKLNATALIDLNHEQFLQLASSVSKIQHANIVKFMGYCAEHSQHLLVYEYCSNGTLHDALHTDAKLQINLSWDDRIQVSLGAARALEYLHEYFQPPIVHGNFTSANVLLNDKLEVQVSDCGLGSLLSSGSASRLSGHQLTANGYSAPEYENGSYTLQSDVFSFGVVMLELLTGRKSYDSSLARGEQFLVRWAVPQLHDIDALSKMVDPSLNAEYPKKSLSRFADIISSCIQHGPEFRPAMSEIVQDLLRMM 617
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3276g00003 617 SUPERFAMILY L domain-like 14 153 - -
Vium3276g00003 617 Pfam Protein tyrosine and serine/threonine kinase 341 613 IPR001245 GO:0004672|GO:0006468
Vium3276g00003 617 FunFam Protein STRUBBELIG-RECEPTOR FAMILY 8 308 416 - -
Vium3276g00003 617 ProSiteProfiles Protein kinase domain profile. 339 617 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium3276g00003 617 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 417 617 - -
Vium3276g00003 617 SUPERFAMILY Protein kinase-like (PK-like) 319 613 IPR011009 -
Vium3276g00003 617 Gene3D Ribonuclease Inhibitor 4 173 IPR032675 -
Vium3276g00003 617 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 16 615 IPR046959 -
Vium3276g00003 617 Gene3D Transferase(Phosphotransferase) domain 1 417 617 - -
Vium3276g00003 617 Gene3D Phosphorylase Kinase; domain 1 304 416 - -
Vium3276g00003 617 FunFam protein STRUBBELIG-RECEPTOR FAMILY 3 8 172 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3276g00003 Vium-Chr3276 5453 11624 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3276g00003 11 617 Strubbelig Receptor Gene Family AT4G03390 50.669 0.0 606
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-V Vium3276g00003 PK_Tyr_Ser-Thr 1.9e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3276g00003 - - pvu:PHAVU_002G224200g 1045.42