Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3276g00001 ATGGGTTGTTGGAATTCAGACATGAATTTGCAAATTTTCTTGTTTTCAATGTTGACTTTCGGTGCAACTTTCTGTGTTGCGGACACTGATCCACTTGATGTTGCGGCAATAAATAGTCTGTATGTGGCTCTTGGCTCACCACCCCTTGAGGGGTGGAAAGCCATAGGAGGAGATCCCTGCTTGGAACAATGGCAAGGTGTGCGTTGTGTCTTCTCCAACATAACTGCTTTGCTACTGGGAGGCATGAGTTTAAGTGGACAACTGGGAAGTAATTTGGATTTCCCATCCATCATAGAATTGGATCTTAGCAACAACCAGATTGGAGGGGCCATTCCATCCAGTTTGTCCCCTACTTTAAGGAACTTGTCACTCTCAGCTAATAAATTAAATGGAAGCATTCCAGATGCCTTGTCCTCATTAACTCAATTGTCAGACTTGTCATTAAAAGATAACCATCTGAATGGAGAAATTCCAGATGCATTTCTACACTTTACTGATTTGATAAATATGGATCTGTCTGGAAACAACTTGAGTGGTCAGCTGCCTCCCTCAATGGGGAATTTGTCATCTCTTAACACATTACATTTGCAGAACAATCAACTTTCTGGGACCCTTTTTGTTTTGCAGGACCTCCCTCTTCAGGATCTGAATATAGAGAACAATATATTCTCTGGGCCAATTCCTCCGGAGTTGTTGAGTATCCCTAATTTCAGAAAAGATGGGAATCCGTTTAATACTACTATCATTCCATCACCTCCAGCTGCTTCCCCTGCACCTCTTGCTATGGCTCCCTCCCCAGAAATATCACCTTGGAAAGTGGCCAATAGTCCATCTGCTACCACCATAAAAGCTCCAATACCTGCAACTGCTGAGAGGTCTTTCAGAACCAAGAAATTAGTTTGGATTGTTGGTGCAGGCTTTTTAATATTTATTGCATTAGGAGTTTGTCTTCTTATGTTGTGGTGCTTTAAGAGAAGACCAGAGAACAGGAGTTATAAGAAACACAACATGAACGTGTATAAAAGATCTTTGCATAAACGTACAAGCAGTGACTCCCCTTTTGAAGCAACTGATGATGAGGAGAAAGGATGGGGTTCAAAACTTCCAGCCTTGCAGCCAGCGCCACCACATAAACTCCCAATCATTCCTGGAGAGAATTTAATCATTAATCGAGCTATCTTTGGTGAAGAAACCAAAAGACAAATTGTAACAAATTCCATCAAAGTTTATACTGTTGCATCACTTCAGCAATACACAAATAGTTTTTCCCTAGAAAATTATATTGGCGAAGGCATGCTTGGCCCTGTTTATAGGGCTGAACTCCCTGATGGAAAGTTACTGGCAGTCAGGAAGTTGAATGCTACTGCTTTGATTGACCTAAACCACGAACAGTTTCTTCAATTAGCTTCCAGTGTCTCCAAAATTCAACATGCTAATATTGTAAAGTTTATGGGCTACTGTGCCGAGCATAGCCAACACTTACTTGTATATGAGTATTGTAGTAATGGCACCCTTCATGATGCATTGCATACAGATGCTAAACTTCAGATTAACCTTTCATGGGATGATCGCATTCAAGTGTCACTTGGAGCGGCAAGAGCTTTAGAGTATTTGCATGAGTACTTTCAGCCACCTATTGTGCACGGAAACTTTACATCTGCTAACGTACTACTCAATGACAAGTTGGAAGTTCAGGTCTCGGATTGTGGATTAGGTTCTTTACTATCTTCAGGCTCCGCAAGTCGGTTGTCGGGACACCAACTCACAGCTAATGGTTACAGTGCCCCAGAATACGAGAATGGAAGTTATACACTTCAAAGTGATGTCTTTAGCTTTGGAGTTGTAATGCTAGAGCTCCTCACTGGACGAAAATCCTATGACAGCTCACTGGCTCGTGGAGAGCAGTTTTTGGTGAGATGGGCAGTCCCTCAACTCCATGACATAGATGCATTGTCAAAAATGGTTGACCCTTCTTTAAATGCAGAATATCCTAAGAAATCCTTGTCACGTTTTGCAGACATTATTTCCTCATGTATACAGCATGGACCTGAATTTCGACCAGCAATGTCAGAAATTGTTCAGGATCTCTTGCGAATGATGTAG 2103 0.418 MGCWNSDMNLQIFLFSMLTFGATFCVADTDPLDVAAINSLYVALGSPPLEGWKAIGGDPCLEQWQGVRCVFSNITALLLGGMSLSGQLGSNLDFPSIIELDLSNNQIGGAIPSSLSPTLRNLSLSANKLNGSIPDALSSLTQLSDLSLKDNHLNGEIPDAFLHFTDLINMDLSGNNLSGQLPPSMGNLSSLNTLHLQNNQLSGTLFVLQDLPLQDLNIENNIFSGPIPPELLSIPNFRKDGNPFNTTIIPSPPAASPAPLAMAPSPEISPWKVANSPSATTIKAPIPATAERSFRTKKLVWIVGAGFLIFIALGVCLLMLWCFKRRPENRSYKKHNMNVYKRSLHKRTSSDSPFEATDDEEKGWGSKLPALQPAPPHKLPIIPGENLIINRAIFGEETKRQIVTNSIKVYTVASLQQYTNSFSLENYIGEGMLGPVYRAELPDGKLLAVRKLNATALIDLNHEQFLQLASSVSKIQHANIVKFMGYCAEHSQHLLVYEYCSNGTLHDALHTDAKLQINLSWDDRIQVSLGAARALEYLHEYFQPPIVHGNFTSANVLLNDKLEVQVSDCGLGSLLSSGSASRLSGHQLTANGYSAPEYENGSYTLQSDVFSFGVVMLELLTGRKSYDSSLARGEQFLVRWAVPQLHDIDALSKMVDPSLNAEYPKKSLSRFADIISSCIQHGPEFRPAMSEIVQDLLRMM 700
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3276g00001 700 FunFam Protein STRUBBELIG-RECEPTOR FAMILY 8 391 499 - -
Vium3276g00001 700 FunFam protein STRUBBELIG-RECEPTOR FAMILY 3 30 255 - -
Vium3276g00001 700 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 500 700 - -
Vium3276g00001 700 Pfam Protein tyrosine and serine/threonine kinase 424 696 IPR001245 GO:0004672|GO:0006468
Vium3276g00001 700 SUPERFAMILY Protein kinase-like (PK-like) 402 696 IPR011009 -
Vium3276g00001 700 Gene3D Transferase(Phosphotransferase) domain 1 500 700 - -
Vium3276g00001 700 Gene3D Ribonuclease Inhibitor 34 251 IPR032675 -
Vium3276g00001 700 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 19 698 IPR046959 -
Vium3276g00001 700 Gene3D Phosphorylase Kinase; domain 1 387 499 - -
Vium3276g00001 700 SUPERFAMILY L domain-like 33 236 - -
Vium3276g00001 700 ProSiteProfiles Protein kinase domain profile. 422 700 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3276g00001 Vium-Chr3276 5453 13178 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3276g00001 23 700 Strubbelig Receptor Gene Family AT4G03390 50.872 0.0 676
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-V Vium3276g00001 PK_Tyr_Ser-Thr 2.5e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3276g00001 - - pvu:PHAVU_002G224200g 1228.77