Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3275g00016 ATGATTTCGTCAATTTCATGGGTACCAAAAGGAGTATCAAAACCAGTTATCTACATGACCAAAGCCATGAAGGACGTCCTCAGGGAATTTTATGGTGATGAGGATCCATATCTCAGCAAAGATAAAGATGAATATGATTATGATTATGAGGAACTTTGCAATCCCATTTATCCAACGGATTCTCTCATTGTTTGTGCACGGCCAAAGGTAGAAGGTAGTGATAGTTTTGGTATTCTTGAGGTTTTGACACTTAATCCCCATGACATCCGAAATTCAGCATCGCCGCTTTATCACCATGACATCCGAATTCCAGTATTGCCGCATAATCATCATGAAATCCTAATTTCAGCATTGCCGCTTTGCTCAGCTTGGCTTGATTGTCCCCTTCAAGGAGGAGAGAGAGGGAACTTCTTAGCTGTTGGTTCAATGGAACCTAATATTGGAATTTTTAACATTGACGTTATTCAAGGGGATGGAAGGGGAGAGCCATGTATGGTGTTGGGTAGCACTGAAGATGATGGGCACAGTGACGCAGTACTTGGTCTTGCATGGAACAAAGAGTACAGGAATATAATTGCAAGTGCGAGTGTTGACAAGCAAGTGAAGATTTGGGATGTTGTCAGTGGGAAGTGTGAAATTACAATGACGGATCACTCAGACAAGGTTCAAGCTGTTGCTTGGAATCTCCATTCACCGCGGCTTCTTCTTAGTGGTTCGTTTGATGGTACTGTTTTTCTGAAGGACGGGAGGATGCCATCAAACGATGGTTGTGAGTGGAAACTCAATGCTAAAGTAAAGAGCTTGGCATGGGATCCACACTCTGAGCACTCTTTTGTGGCGAGTCTTGCAAATGGTACTGTTAGATTGATTGATGTTCGGACTGCCAAGTCAGATTCCGGATCTGAGTTCAATGCTAATGAACACGGCAAAGCTGTTACATCAGTATCCTACAATCCGTCAGCTCCTAATCTTCTCGCCACTGGATCGGAGGACGAAACGGTAAAGCTTTGGGATTTGTCACACAACCAACCTTCTTGTGTGGCCTCTTATTCTCCACAAGTAGGGCCTGTCTTTTGTATTTCATTCTCGGAAGAGGACCCTTTTTTTTTGGCTATAGGAGGCTCAAAGGGAAATTTACGAATATGGAACCTTCACCGGGATTCTGGAATTTCTCAAAGATATGGGAATTACATGAAGTAA 1200 0.4308 MISSISWVPKGVSKPVIYMTKAMKDVLREFYGDEDPYLSKDKDEYDYDYEELCNPIYPTDSLIVCARPKVEGSDSFGILEVLTLNPHDIRNSASPLYHHDIRIPVLPHNHHEILISALPLCSAWLDCPLQGGERGNFLAVGSMEPNIGIFNIDVIQGDGRGEPCMVLGSTEDDGHSDAVLGLAWNKEYRNIIASASVDKQVKIWDVVSGKCEITMTDHSDKVQAVAWNLHSPRLLLSGSFDGTVFLKDGRMPSNDGCEWKLNAKVKSLAWDPHSEHSFVASLANGTVRLIDVRTAKSDSGSEFNANEHGKAVTSVSYNPSAPNLLATGSEDETVKLWDLSHNQPSCVASYSPQVGPVFCISFSEEDPFFLAIGGSKGNLRIWNLHRDSGISQRYGNYMK 399
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3275g00016 399 Gene3D - 103 250 IPR015943 GO:0005515
Vium3275g00016 399 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 172 210 - -
Vium3275g00016 399 PANTHER PERIODIC TRYPTOPHAN PROTEIN 1 33 396 IPR044285 GO:0006364
Vium3275g00016 399 PRINTS G protein beta WD-40 repeat signature 192 206 IPR020472 -
Vium3275g00016 399 PRINTS G protein beta WD-40 repeat signature 370 384 IPR020472 -
Vium3275g00016 399 PRINTS G protein beta WD-40 repeat signature 325 339 IPR020472 -
Vium3275g00016 399 ProSiteProfiles Trp-Asp (WD) repeats profile. 172 214 IPR001680 GO:0005515
Vium3275g00016 399 Gene3D - 252 394 IPR015943 GO:0005515
Vium3275g00016 399 ProSiteProfiles Trp-Asp (WD) repeats profile. 305 347 IPR001680 GO:0005515
Vium3275g00016 399 SUPERFAMILY WD40 repeat-like 119 384 IPR036322 GO:0005515
Vium3275g00016 399 SMART WD40_4 254 291 IPR001680 GO:0005515
Vium3275g00016 399 SMART WD40_4 160 205 IPR001680 GO:0005515
Vium3275g00016 399 SMART WD40_4 343 383 IPR001680 GO:0005515
Vium3275g00016 399 SMART WD40_4 208 248 IPR001680 GO:0005515
Vium3275g00016 399 SMART WD40_4 298 338 IPR001680 GO:0005515
Vium3275g00016 399 ProSitePatterns Trp-Asp (WD) repeats signature. 325 339 IPR019775 -
Vium3275g00016 399 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 305 340 - -
Vium3275g00016 399 ProSitePatterns Trp-Asp (WD) repeats signature. 192 206 IPR019775 -
Vium3275g00016 399 Pfam WD domain, G-beta repeat 209 245 IPR001680 GO:0005515
Vium3275g00016 399 Pfam WD domain, G-beta repeat 173 205 IPR001680 GO:0005515
Vium3275g00016 399 Pfam WD domain, G-beta repeat 345 383 IPR001680 GO:0005515
Vium3275g00016 399 Pfam WD domain, G-beta repeat 307 338 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3275g00016 Vium-Chr3275 131710 135052 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3275g00016 189 386 U-box Gene Family AT2G33340 29.412 2.26e-13 69.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3275g00016 K14791 - gmx:100807947 426.017