Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3275g00009 ATGGGGAATCCAGTGAATATTACTGTGGGTTCTCATGTCTGGGTTGAAGATCCAGATGTATCTTGGATTGATGGACAGGTATCAAATATCAAGGGAAAGGATGCTGAAATTCATACAACCAATGGAAAGAAGGTGGTGACAAAGTTATCAAAAATATATCCCAAAGATATGGAAGCTCCTGCAGGTGGAGTGGATGATATGACTAAGCTTTCATATTTGCATGAGCCCGGAGTCCTGCGGAACTTAAAAACTAGATATGAATTGAATGAAATATATACTTATACTGGTAATATACTGATTGCAATAAATCCATTCCAAAGGCTACCTCATATTTATGATTCCCACATGATGCAACAATACAAGGGAGCACCATTTGGAGAGTTAAGTCCTCATGTATTTGCCATTGCTGATGTTGCATATAGGGCAATGATTCACGAAGGAAAAAGCAATTCAATTTTGGTCAGTGGGGAAAGTGGAGCTGGTAAAACTGAAACTACAAAAATGCTTATGAGATATCTTGCCTTCTTAGGTGGTAGGGCTGCCACTGAAGGTCGAACTGTTGAGCAACAAGTTCTTGAATCAAATCCAGTTCTGGAAGCATTTGGCAATGCTAAAACTGTCAGGAATAACAATTCCAGTCGTTTTGGTAAATTTGTTGAGATCCAATTTGACAAGAGTGGTAGAATCTCGGGAGCAGCCATTCGAACATACCTTCTGGAGAGATCTCGGGTCTGCCAGATTAATGATCCTGAACGCAACTACCACTGCTTTTATTTTCTTTGTGCTGCACCCCAGGAGGAAATTGATAAATACAAATTAGGAAGTCCTACAACATTTCATTACCTTAACCAGTCAAAATGCTATGACCTGGCTGATATAAGTGATTCTCGTGAGTATCTTGCTACCAGGAGAGCTATGGATATTGTTGGAATAAGCCAAAAAGAACAGGAAGCAATTTTCAGAGTTGTTGCTGCGATTCTTCATATAGGGAATATTGATTTTACAAAAGGCAAGGAAGTTGATTCATCAGTTCCAAAAGATGATAAAGCCAATTTCCATTTAAAAACTACTGCTGAGCTTCTTATGTGCGATGCTGGTTCCTTGGAAGATGCATTATGCAAGCGTGTCATGATCACCCCTGAGGAAGTTATAAAACGAAGCCTTGATCCAGAAAGTGCAGCAGTCAGCAGAGATGGCTTGGCAAAAACAATTTATTCTAGGCTCTTTGACTGGTTGGTGAACAAGATTAATAATTCAATTGGACAGGACTCCAGTTCTAAATCTTTGATTGGGGTGCTTGATATCTATGGTTTTGAAAGCTTTAAATCTAACAGTTTTGAGCAGTTCTGCATTAATTTCACAAATGAGAAGCTGCAGCAACATTTCAATCAGCACGTGTTTAAGATGGAGCAAGAAGAATACACGAAGGAGCGGATCAATTGGAGCTACATTGAATTTGTTGACAACCAAGATGTCTTGGACCTTATTGAAAAGAAACCTGGAGGAATAATTGCACTCCTTGATGAGGCTTGTATGTTTCCAAAGTCCACACATGAAACATTTTCAAACAAACTTTATCAGACATTTAAGAATCACAAACGCTTTGTTAAGCCAAAACTGTCTCGAACAAATTTCATTATTTCTCATTATGCTGGCGAGGTGCACTACCAGTCTGATCAGTTTTTAGACAAAAACAAAGATTACGTGGTTGCTGAGCATCAAGATTTATTGAGTGCTTCCAATTGTCCATTTGTAGCAGGCCTTTTTCCTCCACTTCCAGAGGAGACATCCAAATCCTCTAAATTTTCTTCAATTGGTTCTCGATTTAAGCTGCAACTACAGCAATTAATGGAAACACTAAGCTCTACACAGCCTCATTACGTTAGATGTGTGAAACCAAACAACCTCCTCAAGCCTGCAATTTTTGAGAATTCCAATGTCATGCAGCAACTTCGCTGTGGTGGTGTTTTAGAGGCAATCAGAATCAGTTGTGCTGGCTACCCTACGCGCCGAGCTTTCTTTGAATTTATAAACCGATTTTCCCTTCTTGCTCCAGAGATCACAGAAATACATCATGATGAGAAGACTGTTTGCCTGAAGATTCTGGAAAAAGCAGGGCTTAAAGGATATCAGATTGGACAAACAAAGGTTTTCCTAAGAGCTGGTCAGATGGCTGAACTAGATGCACGGAGAGCTCAAATGCTTGGTAATGCAGCAAAAACTATTCAACGGCGTATACGAACCCATCAAGCTCGTAAACATTATCTTGCACTACGCAAGAACACTACAATTATGCAGGCTCTTTGGAGAGGAAGACTTGCATTCAAATTTTATAACAAATTGAGAAGGGATGCAGCTGCAGTGAAAATTCAGAAGAATATACGTAGATATGGAGCTATGAAATCCTATACTAAACTCAAAGCATCAGTGCTTACTGTGCAAACGGCTTTAAGGGCAATTGCTTCCCTCAAGGAGTTCAGATTTAGGAAACAGGCTAAGGCTTCCATCATTATTCAGGCTCAGTGGCAGTGCCACAAAGCTGCTTCATATTATAAGAAGCTCAAGAAAGGTTCAATTATCACCCAATGCCGATGGAGGGGTCTCATGGCAAGGAGAGAACTTAGGAAACTGAAAATGGCTGCAAGAGAAACTGGTGCACTTAAAGAGGCAAAGGACAAGCTTGAAAAAAGAGTGGAGGAACTCACTTGGCGTCTTCAACTAGAGAAAAGTTTAAGGAGCAACCTAGAAGAATCCAAAGCACAAGAGATAGCAAAACTGCAGAATTTACTGCAGGAGATGCAGAACAAATTTGATGAAACCAATGCATTACTTATAAAGGAGCGTGAGGCTGCAAAGAAAGCTATCGATGAAGCACCCCCTGTTGTTAAAGAAACGCAGGTTATTGTTGAAGACACTCAGAAGATTGAATCACTAACAGTGGAAATTGATAGTCTAAAGAGCTCCCTTGAGTCAGAGAAACAGAAAGCTGATGACTTTGAAATGAAATATAAAGAGTCCCAAGCTTATTGTGAAGAAAAGAGTAAATTATTAGAAGACACAGAGAAGAAGGTTCGTCAGCTACAAGAATCCATGACCAGGCTAGAAGAGAAAGTTGCTAATTCAGAATCAGAGAATCAAGTTCTACGTCAACAAGCTGTGTCAATGGCACCCAATAAGTTCCTCTCAGGACGTTCTAGATCCGTTATACAGCGACCAGATGGTGGACATATTGCAACGGAAGCAAAGTCAACTTTGGATATGCATAGCACATCAATGAACCATAGGGAACATTCTGAAGTGGATGATAAACCACAGAAGTCACTTAATGAGAAACAACAGGAGAATCAAGAGTTACTCATTAGAAGCATTCAACAAAACCTAGGATTTTCTGGGAATAGACCAGTTGCTGCTTGTATCATATACAAATGCCTCTTGCATTGGAGATCATTTGAAGTGGACCGTACTAGCGTTTTTGATCGTCTAATCCAAACAGTTGGTCACGCAGTTGAGACGCAAGATAATAATGATGTCTTGGCTTATTGGTTATCCAATGCCTCTACACTGGTCTTGTTACTACAGCGCACACTAAAGGCAAGTGGTGCAGCTGGAATGGCTCCTCAACGTCGTCGATCTTCATCAGGGAGTCTGTTCGGGAGGGTGACACATAGTTTCCGTGGAACTCCAGCAGGAGTCACCCTTCCCCTAATCAATGGTAGCATGAGCGGTGTAGATACGTTAAAAGTTGAAGCCAAGTACCCTGCTCTCCTTTTCAAACAGCAGCTTACAGCTTATGTGGAAAAGATATATGGAATGATTCGAGATAACTTGAAGAAAGAAATTTCTCCCTTGCTTGGATTATGCATCCAGGCACCCAGAACATCCAGAGCGAGCTTGGTGAAAGGATCATCACGTTCAGTTGCAAACACTGAAGCCCAGAAAGCTTTGATTGCTCACTGGCAGGGGATAGTTAAGAGCCTTGGGAAATTCTTGAGTACTTTGAAAGCAAATCATGTTCCCCCATATTTGGTTCGTAAGGTATTCACTCAAATTTTTTCTTTCATCAACGTCCAACTTTTTAACAGTCTTCTTCTAAGACGGGAGTGCTGCTCATTTAGTAACGGAGAATATGTGAAATCTGGTTTGGGTGAATTGGAGGATTGGTGCTCTGGTGCTACAGATGAGTACTGTGGTTCGGCATGGGATGAGCTCAGACATATAAGACAGGCTATTGGATTTTTGGTCATACATCAGAAACCAAGGAAAACTCTGCATGAAATAAGTCATGACCTCTGCCCAGTCCTCAGCATACAGCAGCTGTATCGGATTAGCACCATGTACTGGGATGACAAATATGGCACACATAGCGTATCCCCTGATGTTATATCCAATATGAGAGAGTTGATGACTGAAGATTCTAATAACGCAGTCAGTAATTCTTTCCTGTTGGATGATGATTCAAGCATTCCGTTTTCTGTTGATGATTTGGCGAAGTCGAAGGAACTGATCGAGATGTCTGATTTAGATCCCCCACAACTATTACGTGAAAACACTGGCTTTAGTTTTCTGTTGCCACGCCCAGACGGACAGATTTCGTAG 4596 0.4086 MGNPVNITVGSHVWVEDPDVSWIDGQVSNIKGKDAEIHTTNGKKVVTKLSKIYPKDMEAPAGGVDDMTKLSYLHEPGVLRNLKTRYELNEIYTYTGNILIAINPFQRLPHIYDSHMMQQYKGAPFGELSPHVFAIADVAYRAMIHEGKSNSILVSGESGAGKTETTKMLMRYLAFLGGRAATEGRTVEQQVLESNPVLEAFGNAKTVRNNNSSRFGKFVEIQFDKSGRISGAAIRTYLLERSRVCQINDPERNYHCFYFLCAAPQEEIDKYKLGSPTTFHYLNQSKCYDLADISDSREYLATRRAMDIVGISQKEQEAIFRVVAAILHIGNIDFTKGKEVDSSVPKDDKANFHLKTTAELLMCDAGSLEDALCKRVMITPEEVIKRSLDPESAAVSRDGLAKTIYSRLFDWLVNKINNSIGQDSSSKSLIGVLDIYGFESFKSNSFEQFCINFTNEKLQQHFNQHVFKMEQEEYTKERINWSYIEFVDNQDVLDLIEKKPGGIIALLDEACMFPKSTHETFSNKLYQTFKNHKRFVKPKLSRTNFIISHYAGEVHYQSDQFLDKNKDYVVAEHQDLLSASNCPFVAGLFPPLPEETSKSSKFSSIGSRFKLQLQQLMETLSSTQPHYVRCVKPNNLLKPAIFENSNVMQQLRCGGVLEAIRISCAGYPTRRAFFEFINRFSLLAPEITEIHHDEKTVCLKILEKAGLKGYQIGQTKVFLRAGQMAELDARRAQMLGNAAKTIQRRIRTHQARKHYLALRKNTTIMQALWRGRLAFKFYNKLRRDAAAVKIQKNIRRYGAMKSYTKLKASVLTVQTALRAIASLKEFRFRKQAKASIIIQAQWQCHKAASYYKKLKKGSIITQCRWRGLMARRELRKLKMAARETGALKEAKDKLEKRVEELTWRLQLEKSLRSNLEESKAQEIAKLQNLLQEMQNKFDETNALLIKEREAAKKAIDEAPPVVKETQVIVEDTQKIESLTVEIDSLKSSLESEKQKADDFEMKYKESQAYCEEKSKLLEDTEKKVRQLQESMTRLEEKVANSESENQVLRQQAVSMAPNKFLSGRSRSVIQRPDGGHIATEAKSTLDMHSTSMNHREHSEVDDKPQKSLNEKQQENQELLIRSIQQNLGFSGNRPVAACIIYKCLLHWRSFEVDRTSVFDRLIQTVGHAVETQDNNDVLAYWLSNASTLVLLLQRTLKASGAAGMAPQRRRSSSGSLFGRVTHSFRGTPAGVTLPLINGSMSGVDTLKVEAKYPALLFKQQLTAYVEKIYGMIRDNLKKEISPLLGLCIQAPRTSRASLVKGSSRSVANTEAQKALIAHWQGIVKSLGKFLSTLKANHVPPYLVRKVFTQIFSFINVQLFNSLLLRRECCSFSNGEYVKSGLGELEDWCSGATDEYCGSAWDELRHIRQAIGFLVIHQKPRKTLHEISHDLCPVLSIQQLYRISTMYWDDKYGTHSVSPDVISNMRELMTEDSNNAVSNSFLLDDDSSIPFSVDDLAKSKELIEMSDLDPPQLLRENTGFSFLLPRPDGQIS 1531
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3275g00009 1531 Pfam Myosin head (motor domain) 64 720 IPR001609 GO:0003774|GO:0005524|GO:0016459
Vium3275g00009 1531 Pfam Myosin N-terminal SH3-like domain 9 51 IPR004009 GO:0003774|GO:0005524|GO:0016459
Vium3275g00009 1531 SMART iq_5 853 875 IPR000048 GO:0005515
Vium3275g00009 1531 SMART iq_5 782 804 IPR000048 GO:0005515
Vium3275g00009 1531 SMART iq_5 830 852 IPR000048 GO:0005515
Vium3275g00009 1531 SMART iq_5 734 756 IPR000048 GO:0005515
Vium3275g00009 1531 SMART iq_5 757 779 IPR000048 GO:0005515
Vium3275g00009 1531 CDD MyosinXI_CBD 1110 1493 IPR037975 GO:0007015
Vium3275g00009 1531 CDD MYSc_Myo11 76 720 IPR036018 -
Vium3275g00009 1531 Gene3D Myosin VI head, motor domain, U50 subdomain 312 601 - -
Vium3275g00009 1531 ProSiteProfiles Myosin N-terminal SH3-like domain profile. 8 57 IPR004009 GO:0003774|GO:0005524|GO:0016459
Vium3275g00009 1531 MobiDBLite consensus disorder prediction 1089 1110 - -
Vium3275g00009 1531 ProSiteProfiles IQ motif profile. 783 812 IPR000048 GO:0005515
Vium3275g00009 1531 FunFam unconventional myosin-Va 833 881 - -
Vium3275g00009 1531 Pfam DIL domain 1346 1449 IPR002710 -
Vium3275g00009 1531 ProSiteProfiles IQ motif profile. 758 787 IPR000048 GO:0005515
Vium3275g00009 1531 Gene3D Kinesin motor domain 65 662 IPR036961 -
Vium3275g00009 1531 Gene3D - 439 623 - -
Vium3275g00009 1531 SMART MYSc_2a 57 733 IPR001609 GO:0003774|GO:0005524|GO:0016459
Vium3275g00009 1531 MobiDBLite consensus disorder prediction 1088 1112 - -
Vium3275g00009 1531 Gene3D - 667 733 - -
Vium3275g00009 1531 PANTHER MYOSIN 54 1458 - -
Vium3275g00009 1531 PRINTS Myosin heavy chain signature 482 510 IPR001609 GO:0003774|GO:0005524|GO:0016459
Vium3275g00009 1531 PRINTS Myosin heavy chain signature 429 457 IPR001609 GO:0003774|GO:0005524|GO:0016459
Vium3275g00009 1531 PRINTS Myosin heavy chain signature 92 111 IPR001609 GO:0003774|GO:0005524|GO:0016459
Vium3275g00009 1531 PRINTS Myosin heavy chain signature 149 174 IPR001609 GO:0003774|GO:0005524|GO:0016459
Vium3275g00009 1531 PRINTS Myosin heavy chain signature 196 223 IPR001609 GO:0003774|GO:0005524|GO:0016459
Vium3275g00009 1531 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 784 883 IPR027417 -
Vium3275g00009 1531 FunFam Myosin 2 312 429 - -
Vium3275g00009 1531 ProSiteProfiles Dilute domain profile. 1159 1470 IPR002710 -
Vium3275g00009 1531 FunFam Myosin heavy chain 252 307 - -
Vium3275g00009 1531 Gene3D - 252 310 - -
Vium3275g00009 1531 FunFam Class V myosin 439 579 - -
Vium3275g00009 1531 Coils Coil 975 1002 - -
Vium3275g00009 1531 ProSiteProfiles IQ motif profile. 854 883 IPR000048 GO:0005515
Vium3275g00009 1531 Coils Coil 877 950 - -
Vium3275g00009 1531 ProSiteProfiles IQ motif profile. 737 763 IPR000048 GO:0005515
Vium3275g00009 1531 Coils Coil 1010 1051 - -
Vium3275g00009 1531 Gene3D - 734 785 - -
Vium3275g00009 1531 Gene3D - 833 882 - -
Vium3275g00009 1531 Gene3D - 786 832 - -
Vium3275g00009 1531 ProSiteProfiles Myosin motor domain profile. 62 732 IPR001609 GO:0003774|GO:0005524|GO:0016459
Vium3275g00009 1531 SMART DIL_2 1345 1452 IPR002710 -
Vium3275g00009 1531 Pfam IQ calmodulin-binding motif 858 875 IPR000048 GO:0005515
Vium3275g00009 1531 Pfam IQ calmodulin-binding motif 785 803 IPR000048 GO:0005515
Vium3275g00009 1531 Pfam IQ calmodulin-binding motif 737 755 IPR000048 GO:0005515
Vium3275g00009 1531 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 36 784 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3275g00009 Vium-Chr3275 50789 66075 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3275g00009 1 1527 Myosins gene family AT1G54560 80.510 0.0 2603
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3275g00009 K10357 - gmx:100816792 2608.56