Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3275g00001 ATGGCTCCTAATGCTGGAGCTGAGAGGGCCTTTAGCTTTATGATGGCCTTGGGAATTTCTAAGGAGGAGGTGAAGCCAGTGTTGATAAAGCTGTTAAGAGTTTATGAAGGAAATTGGGAACTAATTGAAGATGACAATTATCGGACACTTGTAGATGCGTACTTTGATTTTGAGAAAGAGAAGGTTGTTGAAGGTGAGAGAAAACCTAATGCCAGTGGTCATGGCCAAAAATCAACAGGGAAACCGTTCTTGGTAGATGGTGATGACCGTGCTTTATCAAAGATCTTTGAACAGAAAAACGTTAAGCCATCTCAAACATTCACGGAAGACGATAGGCCCCAAACCAGTTCACAAGCATTACATTCAACCATGAGTGAGGCCAAAAAGATCTCTAATTTACCTCGTGGATCAGCTAAGGACAGACCTGAGAAAGCATCATCTGCACGGCACCGTGGCCAGATCGAGATGAACCCTGTGAAGAGAAGGGCTAAAAAACCCAAATTACTTACTTCGACGAATCATAATGGAGATCTTTGTGTTAAACCTCCGTCAAATCAGGATCAGGATTTGCAAAGTAAAAATCCTGTGCCAGACTGCATCAATAATACCCGTGCTTATAATGGAAATATTACAATCGCTAGTTCTTCACATCTTGAAGAAGTTAAATTATCTTTGAATTGTGAGTCAGCCTTGGCAGGACTAAACTTCCGTATTCCTGATTTGGCTATTGTTATGAAGTTCATGGACAAGAAGTACCTTAGCTCAAGCAAAACTGCTGACCCTCAATTTTCTACGGCAAAGTTATTGGATGATCTTTGTAGCATTTTTCTTAAGCTGGGGCTTCGAAAGGGATCAAATTCCAACCTAGCCAATTCAGATACACAATACGCTAGTCTAGAAGAAAGGAAAGCCTTCAATTTTATCAGTGACATAACAAAAGGTTCAGAAAAGGTGAAAATATCGTTAATAGATGAATTTGGCGGTGAAGTCTTGCCAAAATTTAATTACATACCATGCAATATAATATATCAAAGTGCTACTGTAACTATTTCTTTGGCCCGGATTTCGGATGAGGGTTGCTGTTCTGATTGTTCAGGGGACTGTCTTTCTTCATCATTACCATGTGCGTGTGCTCGGGAAACTGGTGGAGAGTTTGCTTACACTCCTCAAGGTTTGTTGAAAGAAGAATTTCTAACTGCTTGCGCGACTATGAAGACTGATCCTAAAGATCATCATTTTGTGTACTGTCAAGAGTGCCCTTTGGAGAAGTCAAAGAATGAGTACATGCCTGAACGATGCAAGGGACATATGGTAAGGAAATTTATAAAGGAATGTTGGAGGAAATGCGGATGTGACATGCTTTGTGGGAATCGGATAGTGCAACGAGGTATTGCATGCAAATTGCAGGTGTTCTTAACTCGAGAAGGTAAAGGATGGGGCCTTAGAACGTTAGAAGATTTGCCAAAAGGAACTTTTGTATGTGAATATATTGGAGAGATATTAACCAATATGGAGTTATACGATAGGATAATGCACGAGAGTGGGAATGACAGACATACATATCCAGTAACTCTTGATGCGGACTGGGGCTCAGAAAAGGGGTTAAAGGATGAGGAGGCACTATGTTTAGATGCAACATATAATGGAAACGTAGGAAGGTTCATCAATCATAGATGCTATGATGCAAATCTCATAGACATTCCCGTTGAAATAGAGAGTCCAGATCACCATTATTATCATCTTGCCTTCTTTACCAATAGAAATGTGAGTGCGTATGAGGAATTGACTTGGGATTATGGTATTGATTTTGATGATACAGATCATCCTATTAAAGCATTTCGGTGTTCTTGTGGAAGCGCCTTCTGCCATGATAAGAAACAAAAAGGTTAG 1890 0.4021 MAPNAGAERAFSFMMALGISKEEVKPVLIKLLRVYEGNWELIEDDNYRTLVDAYFDFEKEKVVEGERKPNASGHGQKSTGKPFLVDGDDRALSKIFEQKNVKPSQTFTEDDRPQTSSQALHSTMSEAKKISNLPRGSAKDRPEKASSARHRGQIEMNPVKRRAKKPKLLTSTNHNGDLCVKPPSNQDQDLQSKNPVPDCINNTRAYNGNITIASSSHLEEVKLSLNCESALAGLNFRIPDLAIVMKFMDKKYLSSSKTADPQFSTAKLLDDLCSIFLKLGLRKGSNSNLANSDTQYASLEERKAFNFISDITKGSEKVKISLIDEFGGEVLPKFNYIPCNIIYQSATVTISLARISDEGCCSDCSGDCLSSSLPCACARETGGEFAYTPQGLLKEEFLTACATMKTDPKDHHFVYCQECPLEKSKNEYMPERCKGHMVRKFIKECWRKCGCDMLCGNRIVQRGIACKLQVFLTREGKGWGLRTLEDLPKGTFVCEYIGEILTNMELYDRIMHESGNDRHTYPVTLDADWGSEKGLKDEEALCLDATYNGNVGRFINHRCYDANLIDIPVEIESPDHHYYHLAFFTNRNVSAYEELTWDYGIDFDDTDHPIKAFRCSCGSAFCHDKKQKG 629
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3275g00001 629 Pfam SET domain 478 600 IPR001214 GO:0005515
Vium3275g00001 629 Pfam Pre-SET motif 311 458 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Vium3275g00001 629 PANTHER INACTIVE HISTONE-LYSINE N-METHYLTRANSFERASE SUVR1-RELATED 1 628 - -
Vium3275g00001 629 FunFam SET-domain containing protein lysine methyltransferase family protein 311 625 - -
Vium3275g00001 629 MobiDBLite consensus disorder prediction 65 84 - -
Vium3275g00001 629 MobiDBLite consensus disorder prediction 96 193 - -
Vium3275g00001 629 SMART set_7 466 606 IPR001214 GO:0005515
Vium3275g00001 629 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 1 628 IPR025776 -
Vium3275g00001 629 MobiDBLite consensus disorder prediction 169 193 - -
Vium3275g00001 629 MobiDBLite consensus disorder prediction 133 162 - -
Vium3275g00001 629 Gene3D - 1 60 IPR043017 -
Vium3275g00001 629 ProSiteProfiles SET domain profile. 466 600 IPR001214 GO:0005515
Vium3275g00001 629 SUPERFAMILY SET domain 318 622 IPR046341 -
Vium3275g00001 629 MobiDBLite consensus disorder prediction 98 130 - -
Vium3275g00001 629 Gene3D SET domain 311 625 IPR046341 -
Vium3275g00001 629 Pfam Ubiquitin-binding WIYLD domain 8 58 IPR018848 -
Vium3275g00001 629 CDD SET_SETDB-like 332 600 - -
Vium3275g00001 629 ProSiteProfiles Pre-SET domain profile. 360 463 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Vium3275g00001 629 SMART preset_2 308 450 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3275g00001 Vium-Chr3275 2555 11373 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3275g00001 307 623 Su(var)3-9 homologs AT5G04940 27.893 1.19e-30 125
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Vium3275g00001 Pre-SET 2.6e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3275g00001 - - vum:124833883 1275.38