Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3270g00006 ATGGCTGAAGCCAATGGCCACCGTCGTGTTGAAACAGTGATTGACATAAGGAAACCACCGGTGAGCTTCAGCGGGGGTCTTGTGTTTGAGTGCCTGACTTACACTGTGACAAAAAAGGCAAAGGTGGAGGGGCAGTGGTCGAGTGAAGAGGTGGACTTGCTGCATGATATCACTAGTTATGCTCCAAAGGGGTGTATCACTGCAGTGATGGGCCCCAGTGGTGCAGGAAAGTCCACTCTTTTGGATGGCCTTGCTGGGAGAATTGCTACTGGAAGCCTTAAAGGGAAGGTCTCCTTGGATGGTGCAACTATGAGTGCAAGTTTGATCAAAAGAACTTCTGCATATATCATGCAGGAAGATAGGCTTTTCCCCATGCTAACTGTCTATGAGACTTTCATGTTTGCTGCCGATTTCCGCCTTGGACCACTCTCACTTGCTGATAAGAAACACAGAGTGGAGAACCTCATCAATCAGCTTGGCTTAACGTCATCTCGGAACACCTACATAGGAGATGAAGGGACAAGAGGAGTGTCCGGCGGAGAGAGGCGGCGCGTCTCAATCGGCGTGGACATCATCCACGGCCCATCACTTCTCTTTCTGGACGAGCCAACCTCAGGGCTAGACTCTACCAGCGCCCACAGCGTGATCGAGAAAGTGCACGACATCGCACGCAGCGGCAGCACCGTCATCCTCACCATCCACCAGCCCTCGTCCAGAATCCAACTCCTCCTCGACCACCTCATCATCCTCGCACGGGGCCAGCTCATGTTCCAAGGGTCGCCGCAAGACGTGGCCCTCCACTTGTCACGCATGCCACGCAAAGTCCCCAAGGGAGAGAACCCCATTGAAAGTCTGATTGACGTGATCCAAGAGTACGATCAGAGTGAGGTTGGAGTTGAAGCACTTGCAGAGTTTGCACGCACTGGGGTGAAACCACCTCCTTTGTCCAACCAGCCCCACTCAGTGTCCACTATTGCACCCTCTTATGCCAATCTCTCTCACCTTAGCCACAGGTTTGACGAGAAGTCTGTGGAGTTTTCTCACTCCTCGCAGGTGAGTAGAAGGGCAGTGGACGGTTTTGATCACAGTCTCAGAAGTCCCTATAACAACACTTCCATGTCGTGGAGCACTGGGAATAGTGCAGCATTTCTCAAGTTCACACCAGCACGGCTTAAGAATGATCACAAGCCCCACAATACCACAAGAAACAATGCTTCACCTGGCTACTACACATACTCGAGTGAAATCTTTCAAGCCACTCCAACACCCCACAGCAGTGACTACACAGTGAATGAGAATGACTACCTCACTCCCTCAAATGGCACACAAGAACACCTTGGCCCAAAGTTTGAAAATTCTTACATAACAGAGATATGGATACTCATTCGCCGCAACTTCATAAACATAAGGCGCACCCCTGAGCTATTCCTCTCAAGACTGATGGTTCTCACCTTCATGGGCTTCATGATGGCCACCATGTTCCACAACCCTAAAAAAGATTTGCAAGGAATCACCAACCGCCTCAGCTTCTTCATCTTCACAGTGTGCCTCTTCTTCTTCTCTTCCAACGATGCTGTCCCAGCCTTCATCCAAGAAAGGTTCATCTTCATAAGGGAAACTTCTCATAATGCCTATAGAGCTTCCACTTACACCATTGCAGGCATCATCACTCACATGCCATTTATTCTTCTTCAAGCAGCTGCCTATGCAGGCATTGTTTGGTTTGCCCTAAAACTCCGAGGCCCTTTTCTTTACTTCTTGCTTGTTCTATTCGTTTCTCTTCTGTCAACCAATTCATTCGTTGTATTTGTGAGCTCAGTGGTGCCAAACTACATATTGGGTTATGCTATGGTTATTGCCTTCACTGCCTTGTTCTTCTTGTTCTGTGGATACTTCTTGAGCAGCCATGACATTCCCCGTTACTGGCGTTGGATGAACACAATTTCAACGATGACATACCCTTATGAGGGGCTCTTGATGAACCAGTACCAGGTCAACGATACGTTTGGATATGTGGATGGAGTACCCATTACCGGTTTTCAGATCTTGGAGAGTCTACATATCAAGACTGATGGAAGTAGGAAGAGGACAGTGGTGCTTATAATGTTTGGTTGGGCTGTGCTATACAGGATTTTATTTTACCTAGTCCTTCGTTTTGCATCGAAAAACCAGAGGTCGTAG 2181 0.486 MAEANGHRRVETVIDIRKPPVSFSGGLVFECLTYTVTKKAKVEGQWSSEEVDLLHDITSYAPKGCITAVMGPSGAGKSTLLDGLAGRIATGSLKGKVSLDGATMSASLIKRTSAYIMQEDRLFPMLTVYETFMFAADFRLGPLSLADKKHRVENLINQLGLTSSRNTYIGDEGTRGVSGGERRRVSIGVDIIHGPSLLFLDEPTSGLDSTSAHSVIEKVHDIARSGSTVILTIHQPSSRIQLLLDHLIILARGQLMFQGSPQDVALHLSRMPRKVPKGENPIESLIDVIQEYDQSEVGVEALAEFARTGVKPPPLSNQPHSVSTIAPSYANLSHLSHRFDEKSVEFSHSSQVSRRAVDGFDHSLRSPYNNTSMSWSTGNSAAFLKFTPARLKNDHKPHNTTRNNASPGYYTYSSEIFQATPTPHSSDYTVNENDYLTPSNGTQEHLGPKFENSYITEIWILIRRNFINIRRTPELFLSRLMVLTFMGFMMATMFHNPKKDLQGITNRLSFFIFTVCLFFFSSNDAVPAFIQERFIFIRETSHNAYRASTYTIAGIITHMPFILLQAAAYAGIVWFALKLRGPFLYFLLVLFVSLLSTNSFVVFVSSVVPNYILGYAMVIAFTALFFLFCGYFLSSHDIPRYWRWMNTISTMTYPYEGLLMNQYQVNDTFGYVDGVPITGFQILESLHIKTDGSRKRTVVLIMFGWAVLYRILFYLVLRFASKNQRS 726
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3270g00006 726 FunFam ABC transporter G family member 6 37 275 - -
Vium3270g00006 726 SMART AAA_5 63 261 IPR003593 GO:0016887
Vium3270g00006 726 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 27 277 IPR003439 GO:0005524
Vium3270g00006 726 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 26 713 - -
Vium3270g00006 726 ProSitePatterns ABC transporters family signature. 177 191 IPR017871 GO:0005524|GO:0016887
Vium3270g00006 726 Gene3D - 40 272 IPR027417 -
Vium3270g00006 726 Pfam ABC-2 type transporter 457 663 IPR013525 GO:0016020|GO:0140359
Vium3270g00006 726 Pfam ABC transporter 54 205 IPR003439 GO:0005524
Vium3270g00006 726 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 50 265 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3270g00006 Vium-Chr3270 29550 33871 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3270g00006 47 291 Calmodulin-binding Proteins AT2G36910 25.806 5.76e-11 64.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3270g00006 K05681 - gmx:100804809 1217.22