Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3270g00004 ATGATGGAGTTACGCGAAATTTGGGTATCGAAACTGGTTGTGGCATGTGCTGTTTGTCTGCATATATTTATCAGATCAGTTTCTGGCTCTGCAACTGAAGGGTTTGAAAACATAGCATGTTGTGCTGATTCAAATTACACAGATCCCCAGACCACCTTAAATTACACAACAGATTACACATGGTTCCCTAACAGAGGAAGCTGCAGAAGACCTAAAATTGGTTTGAATGAAAAAGTTCGACTGTTTTCTATAGATGAAGGAAAGAGATGTTACAATTTACCAACAATTAAGAATAAAGTATATCTGATAAGGGGCACGTTTCCATTTGACAGTATAAATTCTTCATTTAATGTTTCAATTGGGGTAACACAATTAGGTGCAGTGAGACCATCCACGCCCCAGGACTTGGAAATTGAGATTGAGGGAGTTTTTAGGGCTACCAAAGACTACATTGACTTCTGCTTAGTGAAGGGGGAGGTGGATCCGTTTATTTCTCAGCTGGAATTAAGGCCATTGCCAGAAGATTACCTACTTCATGATTTGCCTGCCAGCGTTTTAAAATTGATAAGCAGAAATAGTCTCTGGGACACAAAAGATGAAATCAGGTTCCCAGATGACCCAAGTGATAGAATATGGAAAGCAACTTCAAGTCCATCATCTGCTCTCCCGTTGTCTTACAATGATAAAAATTTTGACCTCAAATCCAACATGACACCACCTCTACGAGTCCTACAGACAGCTCTTACCGACCCTGAGAGATTGGAGATCCACAGCAGCCTTGACACTGAGGATTATGAATATCGTATATTTCTCTACTTCCTTGAATTAAATAGCACTGTCAAAGAAGGGAAAAGGGTGTTTGACATCTATGTTAATAGCGAGATTCAAAGGGAAAAGTTTGACATATTGGCGAGAGGGTCCAACTATACATACACTGTCTTGAATGTTTCAGCAAACGGTTTACTTAATTTAACCTTGGTCAAGGCATCTGGTGCTGAGTTTGGACCCCTTTTGAATGCTTATGAGATCTTGCAAATGCGACCATGGATTGAAGAGACCAACCAAAAAGATGTGGAAGTGATTCAGAAGATTAGAGAAGAACTGTTGTTGCAAAACCAAAACACTAAAGTGCTAGAGAGTTGGACCGGAGACCCTTGTATTTTCCCCTGGCACGGAATAGAGTGTGATGGTTCAAATGGCTCGTCTGTTATCACCAAGCTGGATCTTTCCTCAAGTAATTTCAAAGGACCAATTCCTTCTACTGTTACTGAGATGACCAACTTAAAAATACTGAACCTGAGCCACAACAATTTCAATGGATATATTCCCTCGTTTCCACCGTCCTCCTTGTTGATATCAATAGATCTAAGCTACAATGATCTTATGGGGTCACTTCCAGAATCAATTGTCTCACTGCCATATTTGAAATCTTTGTATTATGCCTGCAACAAACGCATGAGTGAAGACACTCCAGCTAATTTGAATGGTTCCCTGATCAATACAGATTACGGAAGATGCAAAGCAAAAGAACCTAGATTTGGACAAGTATTTGTCATTGGTGCTATCACATGTGGATCACTTCTGATCACATTGGCAGTTGGAATCATTTTTGTTTGCCGCTATAGACAAAAGTTGATTCCATGGGAAGGATTTGGTGGAAAGAACTACTTAATGGAAACAAATGTAATATTCTCTTTGCCAAGCAAAGATGATTTCTTAATAAAGTCTGTATCAATTCAAACATTCACTTTGGAAGATATAGAGGTTGCCACAGAAAGGTACAAAACTTTGATAGGAGAAGGAGGATTTGGTTCTGTTTACCAGGGCACTCTAAATGACGGTCAAGAAGTGGCAGTGAAAGTCCGTTCAGCAACATCAACTCAGGGAACTCGAGAATTTGATAATGAGTTAAACCTTCTTTCGGCAATACAGCATGAAAACCTAGTACCTCTTCTTGGTTACTGTAATGAAAATGATCAACAAATTCTTGTGTATCCTTTCATGTCAAATGGTTCTTTGCAAGACAGACTCTACGGGGAACCCGCAAAGAGAAAAATATTAGACTGGCCAACTAGACTCTCTATTGCTCTTGGTGCAGCTCGAGGTTTGGCATATCTTCACACATTTCCAGGACGTTCAGTAATACACAGGGACGTGAAATCAAGCAATATACTTCTAGATCATAGCATGTGCGCCAAGGTTGCCGATTTTGGTTTCTCAAAATATGCTCCTCAGGAAGGAGACAGTAACGTTTCTCTTGAAGTCAGAGGAACTGCAGGGTACCTGGATCCTGAATATTACAAAACTCAACAATTATCTGAGAAGAGTGATGTCTTCAGCTATGGTGTGGTTTTACTTGAAATTCTGACTGGGAGGGAACCTCTTGACATAAAGAGACCACGGAATGAGTGGAGCTTGGTTGAATGGGCTAAGCCATATATACGAGCATCAAAGATGGAAGAAATTATGGACCCTGGCATCAAGGGGGGATACCATGCAGAGGCAATGTGGAGAGTGGTGGAAGTAGCACTGCAATGTCTTGAACCCTTCTCAGAATATAGACCAAGCATGGTGGACATTGTCCGTGAGTTAGAGGATGCGCTCATCATAGAAAATAATGCATCAGAATACATGAAGTCCATTGACAGCCTTGGAGGATCCAACCGCTACTCTATTGTCATAGAGAAAAGGGTGCTGCCCTCAACTTCATCAACAGCAGAATCAACCATCACAACCCAAGCCTTGTCCCATCCTCAGCCGAGATAG 2766 0.41 MMELREIWVSKLVVACAVCLHIFIRSVSGSATEGFENIACCADSNYTDPQTTLNYTTDYTWFPNRGSCRRPKIGLNEKVRLFSIDEGKRCYNLPTIKNKVYLIRGTFPFDSINSSFNVSIGVTQLGAVRPSTPQDLEIEIEGVFRATKDYIDFCLVKGEVDPFISQLELRPLPEDYLLHDLPASVLKLISRNSLWDTKDEIRFPDDPSDRIWKATSSPSSALPLSYNDKNFDLKSNMTPPLRVLQTALTDPERLEIHSSLDTEDYEYRIFLYFLELNSTVKEGKRVFDIYVNSEIQREKFDILARGSNYTYTVLNVSANGLLNLTLVKASGAEFGPLLNAYEILQMRPWIEETNQKDVEVIQKIREELLLQNQNTKVLESWTGDPCIFPWHGIECDGSNGSSVITKLDLSSSNFKGPIPSTVTEMTNLKILNLSHNNFNGYIPSFPPSSLLISIDLSYNDLMGSLPESIVSLPYLKSLYYACNKRMSEDTPANLNGSLINTDYGRCKAKEPRFGQVFVIGAITCGSLLITLAVGIIFVCRYRQKLIPWEGFGGKNYLMETNVIFSLPSKDDFLIKSVSIQTFTLEDIEVATERYKTLIGEGGFGSVYQGTLNDGQEVAVKVRSATSTQGTREFDNELNLLSAIQHENLVPLLGYCNENDQQILVYPFMSNGSLQDRLYGEPAKRKILDWPTRLSIALGAARGLAYLHTFPGRSVIHRDVKSSNILLDHSMCAKVADFGFSKYAPQEGDSNVSLEVRGTAGYLDPEYYKTQQLSEKSDVFSYGVVLLEILTGREPLDIKRPRNEWSLVEWAKPYIRASKMEEIMDPGIKGGYHAEAMWRVVEVALQCLEPFSEYRPSMVDIVRELEDALIIENNASEYMKSIDSLGGSNRYSIVIEKRVLPSTSSTAESTITTQALSHPQPR 921
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3270g00004 921 PANTHER OS07G0107800 PROTEIN-RELATED 38 868 - -
Vium3270g00004 921 SUPERFAMILY Protein kinase-like (PK-like) 573 864 IPR011009 -
Vium3270g00004 921 Gene3D - 198 347 - -
Vium3270g00004 921 ProSitePatterns Serine/Threonine protein kinases active-site signature. 714 726 IPR008271 GO:0004672|GO:0006468
Vium3270g00004 921 CDD STKc_IRAK 598 865 - -
Vium3270g00004 921 SUPERFAMILY L domain-like 371 487 - -
Vium3270g00004 921 Pfam Malectin-like domain 42 345 IPR024788 -
Vium3270g00004 921 Gene3D Phosphorylase Kinase; domain 1 564 667 - -
Vium3270g00004 921 Pfam Protein tyrosine and serine/threonine kinase 596 864 IPR001245 GO:0004672|GO:0006468
Vium3270g00004 921 FunFam Leucine-rich repeat receptor-like kinase 356 489 - -
Vium3270g00004 921 Gene3D Transferase(Phosphotransferase) domain 1 668 881 - -
Vium3270g00004 921 Gene3D Ribonuclease Inhibitor 357 507 IPR032675 -
Vium3270g00004 921 FunFam Nodulation receptor kinase 557 667 - -
Vium3270g00004 921 FunFam Calmodulin-binding receptor-like cytoplasmic kinase 3 668 884 - -
Vium3270g00004 921 SMART serkin_6 592 869 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium3270g00004 921 ProSiteProfiles Protein kinase domain profile. 592 869 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium3270g00004 921 ProSitePatterns Protein kinases ATP-binding region signature. 598 620 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3270g00004 Vium-Chr3270 14543 22775 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3270g00004 9 871 Receptor kinase-like Gene Family AT1G67720 34.035 3.03e-135 426
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-I-1 Vium3270g00004 Malectin_like 1.3e-45 CL0202
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3270g00004 - - gmx:100781986 1633.62