Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3267g00002 ATGGCTCAGTCACCGCCTTATTATAACCGATTTCCTCAGACTCCAAACTCAACTAAGAAGGGACGTAGTGGCTATGAGCCATCGGACACTGAGACCGAGTGGCAAGAGATTCCACGCCACGAACGAGAAAGAAGAAACTTCATTCTACAACGGAACAAGAGCCCCATGGCACCACACAGGAGGCACCCTTCCAGGGTTGAACATGAAATCTCATCAGCTTCAACAACTTCAGCTCCACGTAGAAGACACAATAGCAAATCACCCTATAAGCTCCACGTAGCAGAAGATGTTGCTGCTTCATCATCGCCCGTAACAGGTTTGGATACACGAAGAAATATCAGTCCCTTGCCGAGACCTGACCTTGGAAGAACTTTGTCCCCTTTCAGGGAGCAAAGAACTGAGAAGCCACACTACAAGAGATCAGTGACTGCTCCCAGGTTGAGGATTCAAGAGAGCAACCATGGAGGGATAATCAATGACACTGTTCTAAAGCAAAGAGAAGCTTCTCCTTTCAAAGCGCCTTCGGTTGGAAAAATCAACGAAATGATAGCCCAGGTGAAGCTATCTAATGATCCCAGAAGTGATTATTCATCAGTGCTTGAAAGCACTGATTCCATTCAACCCGGTGACCTTTTCTTTTCTCGTGAATGCAATGCCTTTGAAGGGAGGAATTCTTCGTTGCCGAAACGCATCCAACAGAGTGAGTATTTCAGTCCAATGCCAACGGTGAACTCCGCGAGAACACCATCTGAAAGCAAAGGAAATAACGGTGATCTTAACATGAATATGAATATTTTGTCTCAATCAACCACGGGTTTGAGTTCTGCTGCCACGAGTAGAAAGGGAAGTGTCACTGGTAAGACAAGTAGTGTAACAAGCGAGGGTAGTGGAAAGACGACCGCAAGCATGAGGAAATTCACAGCTAACAGAAAAAAGAACCAGAAAGATACATGGTTTGCTTGCATGAGAACAGGTAACTGTAGAACCACTACAAAATCTCCTGAACGTCGACCCATTGACGAATCTTCTTACATTGAGAGAGCAGTGGTAGTGGAAAGCCTCCCACAATTCTTGGCAGATAAGCACCAACCTGCTTCACTTAATGGCTTCATTTGCAACAGACAAGAAGCTCAACTTCTGAAGGAATTGGTGTCTCATGGCTCTTGCCCTCATATTTTGCTCAAAGGACCCTCTGGTTCCGGGAAAAGAGAGCTAGCAATGGCTCTTCTTAGAGAAATATATGGTGATGCATGTTATAATGACCAAAGGCTTAAGAAAGTCTCTGTACCCATAACATCCAGTCCTCATCACATGGAGCTAGATGTAAATTCAGAACCAAATGCTAAATATGCTTTAATGGGACTAATCAAAGAAATAAGCAATATATATGCTATTGCCCCTGAAGTAAGCAATATTAATTTGAAGTCAGATTTTAAAGTAATAGTTCTTTATGATGTCCACAAAGCTGTAGATAACATTCAGCACATTATCAAATGGATAGTAGACCGCTATTCTGATATATGCAAATTAGTACTCTGCTGTGAAGATGATGCAGACATCATTGATGCTGTGAAAAATCGGTTCAAAACGGTACAAGTTGATGCTCCTCAAACTCACGAAGTTGTTGAGGTTCTTATGCAGATAGCAAAGAATGAGAAATTTGATCTGTCCATGAACTTTGCTGCGAAGATTGCTACAAAATCTAAGCAGAACCTCAGAAAAGCAATCATGGCTCTGGAAGCATGCAAAGCACACAACTATCCATTTTCAGAAGAACAACCAATTTCAGTTGTATGGGAGGAGATCGTAATAGAAGTTGCCACAGAGATCCTAGCTGATCCATCATATTCACGGTTACTCTCAGTTCGAGGGAAATTTCAAATGCTTCTCTTGGATTTTGTCCAGCCGAAATTGATTCTCCTGAAACTCGTAGAACATCTCTTAAAAAGAATTGATGCCAGCTTAAAGAGGGAGCTATACTACTGGCATGCCTATTATGTGAGTTTCTCCTTCCATAGTTTATCTGAAGTAACCAAAGTCTATAATGAACAGGACAGAAGACTCCCACCAGGAATAACAGCTTTACTAAAGTTAGAAGAATTTGTGGCCAAGTTCATGAGCACCTACAGAAAAAACTCTGGCAATCGGCAATATGTGTAG 2160 0.4227 MAQSPPYYNRFPQTPNSTKKGRSGYEPSDTETEWQEIPRHERERRNFILQRNKSPMAPHRRHPSRVEHEISSASTTSAPRRRHNSKSPYKLHVAEDVAASSSPVTGLDTRRNISPLPRPDLGRTLSPFREQRTEKPHYKRSVTAPRLRIQESNHGGIINDTVLKQREASPFKAPSVGKINEMIAQVKLSNDPRSDYSSVLESTDSIQPGDLFFSRECNAFEGRNSSLPKRIQQSEYFSPMPTVNSARTPSESKGNNGDLNMNMNILSQSTTGLSSAATSRKGSVTGKTSSVTSEGSGKTTASMRKFTANRKKNQKDTWFACMRTGNCRTTTKSPERRPIDESSYIERAVVVESLPQFLADKHQPASLNGFICNRQEAQLLKELVSHGSCPHILLKGPSGSGKRELAMALLREIYGDACYNDQRLKKVSVPITSSPHHMELDVNSEPNAKYALMGLIKEISNIYAIAPEVSNINLKSDFKVIVLYDVHKAVDNIQHIIKWIVDRYSDICKLVLCCEDDADIIDAVKNRFKTVQVDAPQTHEVVEVLMQIAKNEKFDLSMNFAAKIATKSKQNLRKAIMALEACKAHNYPFSEEQPISVVWEEIVIEVATEILADPSYSRLLSVRGKFQMLLLDFVQPKLILLKLVEHLLKRIDASLKRELYYWHAYYVSFSFHSLSEVTKVYNEQDRRLPPGITALLKLEEFVAKFMSTYRKNSGNRQYV 719
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3267g00002 719 Gene3D - 356 536 IPR027417 -
Vium3267g00002 719 MobiDBLite consensus disorder prediction 270 302 - -
Vium3267g00002 719 Gene3D - 538 595 - -
Vium3267g00002 719 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 356 584 IPR027417 -
Vium3267g00002 719 Gene3D - 598 709 - -
Vium3267g00002 719 PANTHER REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT 359 668 - -
Vium3267g00002 719 MobiDBLite consensus disorder prediction 1 23 - -
Vium3267g00002 719 FunFam replication factor C subunit 3 537 595 - -
Vium3267g00002 719 MobiDBLite consensus disorder prediction 1 140 - -
Vium3267g00002 719 MobiDBLite consensus disorder prediction 125 140 - -
Vium3267g00002 719 MobiDBLite consensus disorder prediction 24 49 - -
Vium3267g00002 719 SUPERFAMILY post-AAA+ oligomerization domain-like 598 709 IPR008921 GO:0003677|GO:0006260
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3267g00002 Vium-Chr3267 38345 42066 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3267g00002 359 710 Core DNA Replication Machinery Family AT5G27740 37.705 1.05e-71 236
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3267g00002 K10756 - gmx:100795321 1159.05