Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3262g00003 ATGGGTAACAACAGGTTCAAATTATCAGACATGATCCCCAATGCCTGGTTCTACAAACTCAAGGACATGGGAAAAGCAAGAAAGCAAACCCCATCTCAGTCCAAGAAGAAAAAACAACCTTCACCAGCCTCAAGCACACCACCATCAAAACCAAAACAACCCCACCAATTCAATCCCAGAAAGTCTTACTACTTCACAAGGGAGCTTAACCCAAATGATAGAATCTACACCTCACAAGCAAATAACCAAAATGCCAAATGCAACAATTCCCCTGAAGCCCCCAGAAAATCATCCAAACAAAGATTCAAGAGAAGAACTGCAAGGACTTCTTCACCTAAGTTTGCTGTAGCCGCTAACAATGACAACTCCTCATCACCACATGATAGCTCTGCCGAATCAGAGTACCCTGACCCAGAATTCAGAACAGACCGTGTTCTTGCCACTGAAGCATTTGATGAAACGGTTTCTTGGACCAACTCTTTCGCCTGCAAGGTACACTCCGACGCCAAGGACATCATCATTGAAGTAGACAACAATTCCACAGAAAGAAAAGACGATAAGCTAGAAGGGTATGAATATGATTCCTTCTCGGACCTCGTGCTTCCACCAATTGTGACCAAGCCTGCAAAATTCGATGACTTGCTGAGTGATGCCAAGAAGAAAGAAACCAAAACCAAAACCAAAACCAAAATGGATGCACCAGAAGAACCAAACCTGAAGGGACCTCTAAGAGTTAAAATTGTGAAGGAAGGCACTGCACCAATGAAGGAACATAAGAACACCCCTGGTAGGAGATTCTCTGTGAGCTCTTCTCCAGGGGTGAAGCTGCGGACGAACTCGCCGCGAATTGGCAGCCGGAAAACTCAGGCACATGGCCGGAGGAATGTGTCGTCCGCCGCTGGCTCCGGCTCCCGGAGAAGCCTTTCGGATAGCTTTGCAATTATGAAGTCATCACTGAATCCTCAAAGGGACTTCAGAGAATCAATGGTGGAGATGATTGTGCAGAACAACATAAGGACATCAAAGGATTTAGAGGATCTTCTTGCTTGCTATCTTTCTCTTAATTCAGATGAGTATCATGACCTCATTATCAAAGTGTTCAAGCAAATATGGTTTGATTTAACTGATAATTAG 1134 0.4444 MGNNRFKLSDMIPNAWFYKLKDMGKARKQTPSQSKKKKQPSPASSTPPSKPKQPHQFNPRKSYYFTRELNPNDRIYTSQANNQNAKCNNSPEAPRKSSKQRFKRRTARTSSPKFAVAANNDNSSSPHDSSAESEYPDPEFRTDRVLATEAFDETVSWTNSFACKVHSDAKDIIIEVDNNSTERKDDKLEGYEYDSFSDLVLPPIVTKPAKFDDLLSDAKKKETKTKTKTKMDAPEEPNLKGPLRVKIVKEGTAPMKEHKNTPGRRFSVSSSPGVKLRTNSPRIGSRKTQAHGRRNVSSAAGSGSRRSLSDSFAIMKSSLNPQRDFRESMVEMIVQNNIRTSKDLEDLLACYLSLNSDEYHDLIIKVFKQIWFDLTDN 377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3262g00003 377 PANTHER TRANSCRIPTION REPRESSOR OFP7-RELATED 41 375 IPR038933 GO:0045892
Vium3262g00003 377 MobiDBLite consensus disorder prediction 81 139 - -
Vium3262g00003 377 MobiDBLite consensus disorder prediction 253 307 - -
Vium3262g00003 377 MobiDBLite consensus disorder prediction 22 66 - -
Vium3262g00003 377 MobiDBLite consensus disorder prediction 81 95 - -
Vium3262g00003 377 NCBIfam uncharacterized plant-specific domain TIGR01568 313 375 IPR006458 -
Vium3262g00003 377 Pfam Transcriptional repressor, ovate 318 374 IPR006458 -
Vium3262g00003 377 Pfam DNA-binding domain 1 41 IPR025830 GO:0003677
Vium3262g00003 377 ProSiteProfiles OVATE domain profile. 314 373 IPR006458 -
Vium3262g00003 377 MobiDBLite consensus disorder prediction 264 307 - -
Vium3262g00003 377 MobiDBLite consensus disorder prediction 112 131 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3262g00003 Vium-Chr3262 27076 28674 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF OFP Vium3262g00003 Ovate 2.5e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3262g00003 - - gmx:100794572 529.635