Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3259g00004 ATGGCACACCTGAACCAGCCATTCACAGTCACTTTCCTTTCTATCCTTTTATGTCTTGCTGCAGTTGATCCATCTTTGGCTCTGCATAAACCCTCAAACCAAAACCAAACAATGACTTACATAGAGTCCTCTTGCCAAGGAACAAGGTTCCCTGATCTGTGCATACGTTGCCTAGCCAGATTTTCAAATTCCACCATTGATGGCCCTCAGCACTTGGCCCATCTTGCCCTTTCGGTGAGCCTTTTAAGGGCACTAAAAACTAGGGCATACTTGTTAAAAGTGGCCAAGGAACTTGAAGAGTTCAAGAATAATAGAGTGTACCTTACTGTGCAAGATTGTGTAATTCAACTGAATGATAGTGTTGACCAACTTCGCCAAGCCATCAAAGAGCTCCGCAGGATAAACAAAAGCACCACCATAGATGACAACTTCTTGTGGCACATAAGTAATGTTGAGACATGGGTAAGCACTGCCTTAACAGATGCTAGCTATTGTGTTCAATCGTTCCCGGGAACAAAGATGAGTAAGAGGACTGCTACTGTAAAGTTTAAGGCACAAAATGTTGCAGAGGTCACTAGTAATGCACTGAATTTATTCCACAGATATGCTTCTAGTTACCATGTAGCAGCTAGAGCCACCATGAAACCCTAA 651 0.4301 MAHLNQPFTVTFLSILLCLAAVDPSLALHKPSNQNQTMTYIESSCQGTRFPDLCIRCLARFSNSTIDGPQHLAHLALSVSLLRALKTRAYLLKVAKELEEFKNNRVYLTVQDCVIQLNDSVDQLRQAIKELRRINKSTTIDDNFLWHISNVETWVSTALTDASYCVQSFPGTKMSKRTATVKFKAQNVAEVTSNALNLFHRYASSYHVAARATMKP 216
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3259g00004 216 Gene3D Invertase/pectin methylesterase inhibitor family protein 36 202 IPR035513 -
Vium3259g00004 216 SMART PMEI_2 36 198 IPR006501 GO:0004857
Vium3259g00004 216 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 40 202 IPR035513 -
Vium3259g00004 216 CDD PMEI-like_3 43 204 - -
Vium3259g00004 216 Coils Coil 114 141 - -
Vium3259g00004 216 PANTHER PECTINESTERASE INHIBITOR-LIKE 12 198 - -
Vium3259g00004 216 FunFam Pectinesterase inhibitor 3 36 203 - -
Vium3259g00004 216 Pfam Plant invertase/pectin methylesterase inhibitor 40 198 IPR006501 GO:0004857
Vium3259g00004 216 NCBIfam pectinesterase inhibitor domain 11 201 IPR006501 GO:0004857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3259g00004 Vium-Chr3259 65394 66372 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3259g00004 39 205 Carbohydrate Esterase AT1G53840 24.713 3.81e-09 54.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3259g00004 - - pvu:PHAVU_002G180000g 289.656