Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3256g00006 ATGAGATTGTATTCCAAGAAGAGTCTTTCTTCTTTTAAATCAGCATCATCATGGTTCGAGATATATGCTGCCTTCTCCACACTCACGATTCTCCTCAGAACTGCAATCAATGATCTCATGCCCCATCAGTTTCGATCCTACATCATCTTAAAGCTAGAGGGATTCTTCTGCAAATACCGATCAAATAACAAAGTCTCTATCAAAATTAACCAATTTTGGGATGAAATGTGTGGAGAGCGTAATGAACTTTTTGAAGCAGCCTTGACGTACCTCCCCACCAAGATTACTCACACCTACAAATCGCTCAAAGTTGGCAGACGACAAAACCATAAACACCTTGAGTTTGCAGTGGACGGAGGTGATGATGTGGTGGACAAATTTGAAGGCATGACGTTAACTTGGAAACTGAATGAGGGGTCCAAGGAGGATCCTAGGAACATGAAGAATAACTTTGTATTAACCTTCAATGAGAAACAGAGACAAATGGTACTGGATCGGTATATCCCACATATGGTTAAAACATATGAGGCCATGAAAAATGAGAGAAGGATTTTAAAATTGTATTCTTGGTTAAATGACTTTTGGAACGAAAGTGACTTATCACATCCCGCCACATTTAACTCACTAGCCTTGAGTCCTGAGTTGAAGAAAGATATAATTGATGATTTGGATCGGTTCTTGAGGAGGAAGGACCTTTACAAGAAAGTGGGGAAGGCTTGGAAGCGTGGCTACTTGTTGCATGGACCCCCCGGAACTGGAAAATCTAGCCTTATTGCAGCCATGGCAAACTATTTGAAATTCGATGTGTTTGATTTGGAGCTTTCTTCGATCTTCTCAAACTCAGACCTTATGAGATGCCTGAAGGAAGCATCTAACCGTTGCATAATTGTGATTGAAGACATAGATTGCAACAAGGAGGTGCATGCAAGATCAAATCCAAATGGTACTTCAGAGGATCAAGATTCAGAGTCTGACAGTGAGGGTGCAAAGATGAAGTCAAAGAGCTTTACTTTGTCTGGTTTACTTAACTACATGGACGGTTTGAGCTCAAGTGGTGGAGAGGAGCGGATTATAATATTCACTACTAACCACAAAGAGAAAATTGACCCAGCGTTGTTGCGCCCTGGTCGAATGGACATGCACATTCACATGTCCTTCCTCAAAGGCAAGGCCTTTCGAATGTTGGCTTCCAATTATTTGGGCATTCAAGGACATCATCCACTCTTTCAGCAAATTGACGATCTATTAGAGAAAGTAGAAATCACACCTGCAGTGGTAGGGGAGCAACTATTGAGATATGAGGATCCTCACCTTTGTTTGGAAGAACTTGTTCAATTTCTGACACAAAAGGTCAATGATAGTAATTGTGATTCAGTTGAGAGGGTTGTTTTCAGTAGGAGCATTGACACCAATACGCCTAATTGA 1425 0.4119 MRLYSKKSLSSFKSASSWFEIYAAFSTLTILLRTAINDLMPHQFRSYIILKLEGFFCKYRSNNKVSIKINQFWDEMCGERNELFEAALTYLPTKITHTYKSLKVGRRQNHKHLEFAVDGGDDVVDKFEGMTLTWKLNEGSKEDPRNMKNNFVLTFNEKQRQMVLDRYIPHMVKTYEAMKNERRILKLYSWLNDFWNESDLSHPATFNSLALSPELKKDIIDDLDRFLRRKDLYKKVGKAWKRGYLLHGPPGTGKSSLIAAMANYLKFDVFDLELSSIFSNSDLMRCLKEASNRCIIVIEDIDCNKEVHARSNPNGTSEDQDSESDSEGAKMKSKSFTLSGLLNYMDGLSSSGGEERIIIFTTNHKEKIDPALLRPGRMDMHIHMSFLKGKAFRMLASNYLGIQGHHPLFQQIDDLLEKVEITPAVVGEQLLRYEDPHLCLEELVQFLTQKVNDSNCDSVERVVFSRSIDTNTPN 474
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3256g00006 474 Pfam ATPase family associated with various cellular activities (AAA) 245 384 IPR003959 GO:0005524|GO:0016887
Vium3256g00006 474 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 170 432 IPR027417 -
Vium3256g00006 474 MobiDBLite consensus disorder prediction 307 332 - -
Vium3256g00006 474 PANTHER BCS1 AAA-TYPE ATPASE 23 450 - -
Vium3256g00006 474 CDD RecA-like_BCS1 219 384 - -
Vium3256g00006 474 Gene3D - 196 382 IPR027417 -
Vium3256g00006 474 SMART AAA_5 240 388 IPR003593 GO:0016887
Vium3256g00006 474 ProSitePatterns AAA-protein family signature. 356 374 IPR003960 GO:0005524|GO:0016887
Vium3256g00006 474 Gene3D - 383 455 - -
Vium3256g00006 474 Pfam Domain associated at C-terminal with AAA 40 136 IPR025753 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3256g00006 Vium-Chr3256 39269 40989 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3256g00006 217 384 Calmodulin-binding Proteins AT3G56690 30.114 1.31e-12 68.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3256g00006 - K08900 gmx:100789094 636.336