Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vium3252g00002 | ATGGGTAAACGTTTGTCCCGAACACTCGATCACGATCCTCAACAGTCAGATCTCAATCATGTTGCCCAAGATGATGATGCACTTAACAGGGAGCTTCAGGACAAGTTGGATTTGAAGGATGTGAGTGAGAGTGAGGATAAAGGTTCGAACTTGGAAGATGAGGGTGGCAAGTTGAGTGATGAAGGTGCTGCACCTGAAGGTGGTAAGGGTGAAGGGAGTGAGGATGGTGGCGGTGGTGGTGGTGATGATGTTGGTGTTGTTGATGATGATTGCAATGGAGGGGACGGATGGTGTAATTGGATTGAGTATGTGAATGAGAGTGAAAGTGATAAGGTGGGTGGAGATGTGGAGGGAGTAGATAGCAGGGATGAGAGGAGCAGTGGGAAAGATCAACAGTACCCGTTGAGGCCAGAGGCTGAAAACTGTGCATATTATCTCAAAACCGGAAGTTGCAAATTTGGATTCAATTGCAAGTTCAATCATCCACTTAAGAGGAAAAACCAGGCTAAGAAAGAGAATGCGGGAGAAAAAGAAGAACAAGCAGAAAGATCAGGGCAGACGGAATGCAAGTATTATTTAAGATCTGGTGGGTGTAAGTTTGGGAAGGCTTGTAAGTTTAATCACAAAAGGGAAAAGTGTTCATCCGCATCCCCAATTGCAGAGCTTAACTTCCTTGGCTTGCCTATTCGAGTGGGAGAGAAAGAGTGTCACTATTTCATGCGTACTGGCTCTTGTAAGTTTGGATTAAACTGCAAGTTTAATCATCCTGATCCTACGGCTGGAGGAGGTGATTCTCCTTCTAGATTTGGTAATGGAAGTTCTGTTTCATTACAAGGTGTATCGCAGTCATCTATATCCTCATGGTCTTCTACTAGACCATTAAATGAATCCACTCCTTTTGTGCCAATGATACTTTCAGCTAATCCAGGGGTTTCTCCTCAGAGTTCTGAATGGGACGGATATCAGGCACCTGTCTATCTACCTGAGAGGAATATGCATCTACCTTCAACATATGTCATGAACAACCCAGTTATGGAAACAAATGTTTATATGCATCATCAACAACAAGTGCAGGTTGAAGAGTTTCCAGAAAGGCCTGGTGAACCTGAATGCAGCTATTTTTTAAAAACTGGGGATTGCAAGTTTAAATCTAATTGTAGGTTTCACCATCCAAAGAATCGGATTGCAAGATTACCTCCATGCAGCTTTAGTAACAAGGGTCTACCTTTGAGACCGGACCAGAATGTTTGCACATATTACAGCCGTTATGGAATTTGCAAATTTGGACCAGCTTGTAAGTTCGATCACCCACCACCCTCAACTATGAGTGGACTTGATCAACAATCCTCGTACTCAAATTCTGCTAGTGTTGGTGTGGCTGAAAATGTAGGTGTCAGTGATGGGAAACAATAG | 1413 | 0.4345 | MGKRLSRTLDHDPQQSDLNHVAQDDDALNRELQDKLDLKDVSESEDKGSNLEDEGGKLSDEGAAPEGGKGEGSEDGGGGGGDDVGVVDDDCNGGDGWCNWIEYVNESESDKVGGDVEGVDSRDERSSGKDQQYPLRPEAENCAYYLKTGSCKFGFNCKFNHPLKRKNQAKKENAGEKEEQAERSGQTECKYYLRSGGCKFGKACKFNHKREKCSSASPIAELNFLGLPIRVGEKECHYFMRTGSCKFGLNCKFNHPDPTAGGGDSPSRFGNGSSVSLQGVSQSSISSWSSTRPLNESTPFVPMILSANPGVSPQSSEWDGYQAPVYLPERNMHLPSTYVMNNPVMETNVYMHHQQQVQVEEFPERPGEPECSYFLKTGDCKFKSNCRFHHPKNRIARLPPCSFSNKGLPLRPDQNVCTYYSRYGICKFGPACKFDHPPPSTMSGLDQQSSYSNSASVGVAENVGVSDGKQ | 470 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vium3252g00002 | 470 | SUPERFAMILY | CCCH zinc finger | 135 | 164 | IPR036855 | GO:0046872 | |
Vium3252g00002 | 470 | ProSiteProfiles | Zinc finger C3H1-type profile. | 230 | 258 | IPR000571 | GO:0046872 | |
Vium3252g00002 | 470 | SUPERFAMILY | CCCH zinc finger | 231 | 257 | IPR036855 | GO:0046872 | |
Vium3252g00002 | 470 | Gene3D | - | 321 | 402 | - | - | |
Vium3252g00002 | 470 | Gene3D | - | 114 | 172 | - | - | |
Vium3252g00002 | 470 | SUPERFAMILY | CCCH zinc finger | 409 | 436 | IPR036855 | GO:0046872 | |
Vium3252g00002 | 470 | SUPERFAMILY | CCCH zinc finger | 370 | 394 | IPR036855 | GO:0046872 | |
Vium3252g00002 | 470 | PANTHER | PROTEIN PHOSPHATASE RELATED | 23 | 449 | - | - | |
Vium3252g00002 | 470 | MobiDBLite | consensus disorder prediction | 1 | 88 | - | - | |
Vium3252g00002 | 470 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 140 | 162 | IPR000571 | GO:0046872 | |
Vium3252g00002 | 470 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 414 | 438 | IPR000571 | GO:0046872 | |
Vium3252g00002 | 470 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 233 | 256 | IPR000571 | GO:0046872 | |
Vium3252g00002 | 470 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 367 | 392 | IPR000571 | GO:0046872 | |
Vium3252g00002 | 470 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 186 | 208 | IPR000571 | GO:0046872 | |
Vium3252g00002 | 470 | ProSiteProfiles | Zinc finger C3H1-type profile. | 411 | 439 | IPR000571 | GO:0046872 | |
Vium3252g00002 | 470 | ProSiteProfiles | Zinc finger C3H1-type profile. | 365 | 393 | IPR000571 | GO:0046872 | |
Vium3252g00002 | 470 | SMART | c3hfinal6 | 411 | 438 | IPR000571 | GO:0046872 | |
Vium3252g00002 | 470 | SMART | c3hfinal6 | 232 | 257 | IPR000571 | GO:0046872 | |
Vium3252g00002 | 470 | SMART | c3hfinal6 | 365 | 392 | IPR000571 | GO:0046872 | |
Vium3252g00002 | 470 | SMART | c3hfinal6 | 136 | 163 | IPR000571 | GO:0046872 | |
Vium3252g00002 | 470 | SMART | c3hfinal6 | 183 | 210 | IPR000571 | GO:0046872 | |
Vium3252g00002 | 470 | MobiDBLite | consensus disorder prediction | 109 | 133 | - | - | |
Vium3252g00002 | 470 | ProSiteProfiles | Zinc finger C3H1-type profile. | 183 | 211 | IPR000571 | GO:0046872 | |
Vium3252g00002 | 470 | ProSiteProfiles | Zinc finger C3H1-type profile. | 136 | 164 | IPR000571 | GO:0046872 | |
Vium3252g00002 | 470 | MobiDBLite | consensus disorder prediction | 1 | 60 | - | - | |
Vium3252g00002 | 470 | SUPERFAMILY | CCCH zinc finger | 186 | 212 | IPR036855 | GO:0046872 | |
Vium3252g00002 | 470 | Gene3D | - | 173 | 260 | - | - | |
Vium3252g00002 | 470 | Gene3D | - | 410 | 456 | - | - | |
Vium3252g00002 | 470 | MobiDBLite | consensus disorder prediction | 109 | 131 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Vium3252g00002 | Vium-Chr3252 | 12457 | 16813 | Dispersed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Vium3252g00002 | 133 | 470 | C2H2 Transcription Factor Family | AT3G02830 | 39.831 | 5.60e-74 | 236 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | C3H | Vium3252g00002 | zf-CCCH | 6.6e-09 | CL0537 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vium3252g00002 | - | - | gmx:100809906 | 649.432 |