Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3252g00002 ATGGGTAAACGTTTGTCCCGAACACTCGATCACGATCCTCAACAGTCAGATCTCAATCATGTTGCCCAAGATGATGATGCACTTAACAGGGAGCTTCAGGACAAGTTGGATTTGAAGGATGTGAGTGAGAGTGAGGATAAAGGTTCGAACTTGGAAGATGAGGGTGGCAAGTTGAGTGATGAAGGTGCTGCACCTGAAGGTGGTAAGGGTGAAGGGAGTGAGGATGGTGGCGGTGGTGGTGGTGATGATGTTGGTGTTGTTGATGATGATTGCAATGGAGGGGACGGATGGTGTAATTGGATTGAGTATGTGAATGAGAGTGAAAGTGATAAGGTGGGTGGAGATGTGGAGGGAGTAGATAGCAGGGATGAGAGGAGCAGTGGGAAAGATCAACAGTACCCGTTGAGGCCAGAGGCTGAAAACTGTGCATATTATCTCAAAACCGGAAGTTGCAAATTTGGATTCAATTGCAAGTTCAATCATCCACTTAAGAGGAAAAACCAGGCTAAGAAAGAGAATGCGGGAGAAAAAGAAGAACAAGCAGAAAGATCAGGGCAGACGGAATGCAAGTATTATTTAAGATCTGGTGGGTGTAAGTTTGGGAAGGCTTGTAAGTTTAATCACAAAAGGGAAAAGTGTTCATCCGCATCCCCAATTGCAGAGCTTAACTTCCTTGGCTTGCCTATTCGAGTGGGAGAGAAAGAGTGTCACTATTTCATGCGTACTGGCTCTTGTAAGTTTGGATTAAACTGCAAGTTTAATCATCCTGATCCTACGGCTGGAGGAGGTGATTCTCCTTCTAGATTTGGTAATGGAAGTTCTGTTTCATTACAAGGTGTATCGCAGTCATCTATATCCTCATGGTCTTCTACTAGACCATTAAATGAATCCACTCCTTTTGTGCCAATGATACTTTCAGCTAATCCAGGGGTTTCTCCTCAGAGTTCTGAATGGGACGGATATCAGGCACCTGTCTATCTACCTGAGAGGAATATGCATCTACCTTCAACATATGTCATGAACAACCCAGTTATGGAAACAAATGTTTATATGCATCATCAACAACAAGTGCAGGTTGAAGAGTTTCCAGAAAGGCCTGGTGAACCTGAATGCAGCTATTTTTTAAAAACTGGGGATTGCAAGTTTAAATCTAATTGTAGGTTTCACCATCCAAAGAATCGGATTGCAAGATTACCTCCATGCAGCTTTAGTAACAAGGGTCTACCTTTGAGACCGGACCAGAATGTTTGCACATATTACAGCCGTTATGGAATTTGCAAATTTGGACCAGCTTGTAAGTTCGATCACCCACCACCCTCAACTATGAGTGGACTTGATCAACAATCCTCGTACTCAAATTCTGCTAGTGTTGGTGTGGCTGAAAATGTAGGTGTCAGTGATGGGAAACAATAG 1413 0.4345 MGKRLSRTLDHDPQQSDLNHVAQDDDALNRELQDKLDLKDVSESEDKGSNLEDEGGKLSDEGAAPEGGKGEGSEDGGGGGGDDVGVVDDDCNGGDGWCNWIEYVNESESDKVGGDVEGVDSRDERSSGKDQQYPLRPEAENCAYYLKTGSCKFGFNCKFNHPLKRKNQAKKENAGEKEEQAERSGQTECKYYLRSGGCKFGKACKFNHKREKCSSASPIAELNFLGLPIRVGEKECHYFMRTGSCKFGLNCKFNHPDPTAGGGDSPSRFGNGSSVSLQGVSQSSISSWSSTRPLNESTPFVPMILSANPGVSPQSSEWDGYQAPVYLPERNMHLPSTYVMNNPVMETNVYMHHQQQVQVEEFPERPGEPECSYFLKTGDCKFKSNCRFHHPKNRIARLPPCSFSNKGLPLRPDQNVCTYYSRYGICKFGPACKFDHPPPSTMSGLDQQSSYSNSASVGVAENVGVSDGKQ 470
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3252g00002 470 SUPERFAMILY CCCH zinc finger 135 164 IPR036855 GO:0046872
Vium3252g00002 470 ProSiteProfiles Zinc finger C3H1-type profile. 230 258 IPR000571 GO:0046872
Vium3252g00002 470 SUPERFAMILY CCCH zinc finger 231 257 IPR036855 GO:0046872
Vium3252g00002 470 Gene3D - 321 402 - -
Vium3252g00002 470 Gene3D - 114 172 - -
Vium3252g00002 470 SUPERFAMILY CCCH zinc finger 409 436 IPR036855 GO:0046872
Vium3252g00002 470 SUPERFAMILY CCCH zinc finger 370 394 IPR036855 GO:0046872
Vium3252g00002 470 PANTHER PROTEIN PHOSPHATASE RELATED 23 449 - -
Vium3252g00002 470 MobiDBLite consensus disorder prediction 1 88 - -
Vium3252g00002 470 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 140 162 IPR000571 GO:0046872
Vium3252g00002 470 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 414 438 IPR000571 GO:0046872
Vium3252g00002 470 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 233 256 IPR000571 GO:0046872
Vium3252g00002 470 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 367 392 IPR000571 GO:0046872
Vium3252g00002 470 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 186 208 IPR000571 GO:0046872
Vium3252g00002 470 ProSiteProfiles Zinc finger C3H1-type profile. 411 439 IPR000571 GO:0046872
Vium3252g00002 470 ProSiteProfiles Zinc finger C3H1-type profile. 365 393 IPR000571 GO:0046872
Vium3252g00002 470 SMART c3hfinal6 411 438 IPR000571 GO:0046872
Vium3252g00002 470 SMART c3hfinal6 232 257 IPR000571 GO:0046872
Vium3252g00002 470 SMART c3hfinal6 365 392 IPR000571 GO:0046872
Vium3252g00002 470 SMART c3hfinal6 136 163 IPR000571 GO:0046872
Vium3252g00002 470 SMART c3hfinal6 183 210 IPR000571 GO:0046872
Vium3252g00002 470 MobiDBLite consensus disorder prediction 109 133 - -
Vium3252g00002 470 ProSiteProfiles Zinc finger C3H1-type profile. 183 211 IPR000571 GO:0046872
Vium3252g00002 470 ProSiteProfiles Zinc finger C3H1-type profile. 136 164 IPR000571 GO:0046872
Vium3252g00002 470 MobiDBLite consensus disorder prediction 1 60 - -
Vium3252g00002 470 SUPERFAMILY CCCH zinc finger 186 212 IPR036855 GO:0046872
Vium3252g00002 470 Gene3D - 173 260 - -
Vium3252g00002 470 Gene3D - 410 456 - -
Vium3252g00002 470 MobiDBLite consensus disorder prediction 109 131 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3252g00002 Vium-Chr3252 12457 16813 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3252g00002 133 470 C2H2 Transcription Factor Family AT3G02830 39.831 5.60e-74 236
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Vium3252g00002 zf-CCCH 6.6e-09 CL0537