Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3248g00022 ATGGATGAATATTCTGGTAAAAGAGCCATTGATGGGATGGTAATCCCTAGAAAAGGGGTGAGCCATGTGTTTAGAGACACTGCTAATGCTAAAGATCGAAATGGTCAGGTGTGCAGCCGCCTTACTTGCAGTAGCAGAGTCAACACTTCTAAAGGTGCTCAAATTGGTTCTTCTGAAAAAGGAAAATCTTTGAAACCTTCTATTCAATCTTCTTCTGCTGGAAAGGAAGCTGTTGGAAGCTCCTCTAGAACTTTTCCCAAGACTAGTAGCCCTGGAAAACCGCTTATAAAGCCTCGGAAAAAAGCATCATCTCAGTTAGAGACAGATTCATCTGAAACTAGTAGTGTATTGGATGAGTCAGAGGTTTCACAACTCGCCCCTTCCCCTGTAAAAAGTCAGACAGGGCTTCAAGCTGAAATGGAAAAGACAGTGTCTGGTAATGTCATAATGGAAGTAGGTAGCTCAAGTGTGGTATCCAATTCAAGATCTCGGAGGAATTTTCATCCAAAGTCTGGAATTAGTGGTCAGGAAATTAAAAACACTGGTCCAGTGATGCGTGCTGGTACCAGTAGGTATGGATTGAGGAATCTCAAATGCAACTCTATTTCTGATGTCCTCCCCGCCGGCTGTTCACCTTCAGATTCAACCCTTAACAGAAGGAAGGACATGATAAAAAAGAGGAATTGTGAAGGGGAAGGTAGCTCGTCTGCAAGAGGGAAGAAAATAAGCGGGTCTTCATTAGAAGGACGGAATTCTGGTTCCAGAAATGGCATATCCATTTCTGATTCAAGAATATCTAGGAATACTCCTCCTCACAGGGACAGGTCAGACAGCAACATGGAACCAGTTAGAACTCGAAAATCAATTAGTGGTCATGCCAGGGGAAGGCTTTCTAGCCAAGGAAATGCCAATCCCGTGTCACCCAATCGGTCCCCTGTCATGATACCTTCTTTGTCTCATTCTGGTGGTCGTAATGCTTCTGGTGTATCACATCGTACTTCTGTAGATAGTTCCTTAAGTTGTCCTAGTTCTCACAGTAGGCCAGGTACTAGCAGTGAGGAGTTATATGGTGTTATGCCTGGGTCTCCTTCAGAATATGGCCTCACTCATTCTATAATGAATCTGGATAGCTTTCGAAGGCGTTACAACGTGGATAGTATTGCTGAGGTATTGTTGGCACTTGAGAGGATTGAACAAGATGTTGAGCTAACACATGAGCAAATTCGTTTACTGGAATCCAACTTGTTCCTTACTGGGCTTAACTTCTACGATCCGCATAGAGACATGCGATTGGACATTGATAACATGTCATATGAGCAACTGCTGGCTCTGGAAGAGAGGATGGGTTCTGTGAGCACAGCTCTAACAGAGGAAGCGCTATCAGAATGTCTAAAGAAAAGTTTCTTCCAGTCCTCACCCTCTGAAAATGCAGTCAACAGTTGCAAGGAAGCCAAGGATGACACCAAATGCAGCATTTGCCAGGAGGAATATACGGTTGCGGATGAATTGGGGAGTTTGCATTGCGAGCACATGTATCATGTGGTTTGCATACAGCAGTGGCTTCGGATGAAGAATTGGTGCCCTATTTGCAAAGCATCTGTGGTACCGTCAAATCCATCCACATCTCAATGA 1632 0.4412 MDEYSGKRAIDGMVIPRKGVSHVFRDTANAKDRNGQVCSRLTCSSRVNTSKGAQIGSSEKGKSLKPSIQSSSAGKEAVGSSSRTFPKTSSPGKPLIKPRKKASSQLETDSSETSSVLDESEVSQLAPSPVKSQTGLQAEMEKTVSGNVIMEVGSSSVVSNSRSRRNFHPKSGISGQEIKNTGPVMRAGTSRYGLRNLKCNSISDVLPAGCSPSDSTLNRRKDMIKKRNCEGEGSSSARGKKISGSSLEGRNSGSRNGISISDSRISRNTPPHRDRSDSNMEPVRTRKSISGHARGRLSSQGNANPVSPNRSPVMIPSLSHSGGRNASGVSHRTSVDSSLSCPSSHSRPGTSSEELYGVMPGSPSEYGLTHSIMNLDSFRRRYNVDSIAEVLLALERIEQDVELTHEQIRLLESNLFLTGLNFYDPHRDMRLDIDNMSYEQLLALEERMGSVSTALTEEALSECLKKSFFQSSPSENAVNSCKEAKDDTKCSICQEEYTVADELGSLHCEHMYHVVCIQQWLRMKNWCPICKASVVPSNPSTSQ 543
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3248g00022 543 MobiDBLite consensus disorder prediction 43 137 - -
Vium3248g00022 543 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 452 537 IPR013083 -
Vium3248g00022 543 MobiDBLite consensus disorder prediction 107 137 - -
Vium3248g00022 543 MobiDBLite consensus disorder prediction 155 184 - -
Vium3248g00022 543 FunFam E3 ubiquitin-protein ligase arkadia 452 536 - -
Vium3248g00022 543 ProSiteProfiles Zinc finger RING-type profile. 490 531 IPR001841 -
Vium3248g00022 543 MobiDBLite consensus disorder prediction 267 282 - -
Vium3248g00022 543 SMART ring_2 490 530 IPR001841 -
Vium3248g00022 543 Pfam Ring finger domain 489 531 IPR001841 -
Vium3248g00022 543 MobiDBLite consensus disorder prediction 224 358 - -
Vium3248g00022 543 Coils Coil 394 414 - -
Vium3248g00022 543 SUPERFAMILY RING/U-box 483 537 - -
Vium3248g00022 543 MobiDBLite consensus disorder prediction 43 89 - -
Vium3248g00022 543 MobiDBLite consensus disorder prediction 155 178 - -
Vium3248g00022 543 MobiDBLite consensus disorder prediction 238 266 - -
Vium3248g00022 543 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 74 534 IPR045191 GO:0061630
Vium3248g00022 543 MobiDBLite consensus disorder prediction 292 351 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3248g00022 Vium-Chr3248 79532 84000 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3248g00022 376 535 C3H Transcription Factor Family AT2G15530 40.625 9.33e-32 128
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3248g00022 - - gmx:100787213 900.197