Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3248g00021 ATGGATGAATATTCTGGTAAAAGAGCCATTGATGGGATGGTAATCCCTAGAAAAGGGGTGAGCCATGTGTTTAGAGACACTGCTAATGCTAAAGATCGAAATGGTCAGGTGTGCAGCCGCCTTACTTGCAGTAGCAGAGTCAACACTTCTAAAGGTGCTCAAATTGGTTCTTCTGAAAAAGGAAAATCTTTGAAACCTTCTATTCAATCTTCTTCTGCTGGAAAGGAAGCTGTTGGAAGCTCCTCTAGAACTTTTCCCAAGACTAGTAGCCCTGGAAAACCGCTTATAAAGCCTCGGAAAAAAGCATCATCTCAGTTAGAGACAGATTCATCTGAAACTAGTAGTGTATTGGATGAGTCAGAGGTTTCACAACTCGCCCCTTCCCCTGTAAAAAGTCAGACAGGGCTTCAAGCTGAAATGGAAAAGACAGTGTCTGGTAATGTCATAATGGAAGTAGGTAGCTCAAGTGTGGTATCCAATTCAAGATCTCGGAGGAATTTTCATCCAAAGTCTGGAATTAGTGGTCAGGAAATTAAAAACACTGGTCCAGTGATGCGTGCTGGTACCAGTAGGTATGGATTGAGGAATCTCAAATGCAACTCTATTTCTGATGTCCTCCCCGCCGGCTGTTCACCTTCAGATTCAACCCTTAACAGAAGGAAGGACATGATAAAAAAGAGGAATTGTGAAGGGGAAGGTAGCTCGTCTGCAAGAGGGAAGAAAATAAGCGGGTCTTCATTAGAAGGACGGAATTCTGGTTCCAGAAATGGCATATCCATTTCTGATTCAAGAATATCTAGGAATACTCCTCCTCACAGGGACAGGTCAGACAGCAACATGGAACCAGTTAGAACTCGAAAATCAATTAGTGGTCATGCCAGGGGAAGGCTTTCTAGCCAAGGAAATGCCAATCCCGTGTCACCCAATCGGTCCCCTGTCATGATACCTTCTTTGTCTCATTCTGGTGGTCGTAATGCTTCTGGTGTATCACATCGTACTTCTGTAGATAGTTCCTTAAGTTGTCCTAGTTCTCACAGTAGGCCAGGTACTAGCAGTGAGGAGTTATATGGTGTTATGCCTGGGTCTCCTTCAGAATATGGCCTCACTCATTCTATAATGAATCTGGATAGCTTTCGAAGGCGTTACAACGTGGATAGTATTGCTGAGGTATTGTTGGCACTTGAGAGGATTGAACAAGATGTTGAGCTAACACATGAGCAAATTCGTTTACTGGAATCCAACTTGTTCCTTACTGGGCTTAACTTCTACGATCCGCATAGAGACATGCGATTGGACATTGATAACATGTCATATGAGCAACTGCTGGCTCTGGAAGAGAGGATGGGTTCTGTGAGCACAGCTCTAACAGAGGAAGCGCTATCAGAATGTCTAAAGAAAAGTTTCTTCCAGTCCTCACCCTCTGAAAATGCAGTCAACAGTTGCAAGGAAGCCAAGGATGACACCAAATGCAGCATTTGCCAGGAGGAATATACGGTTGCGGATGAATTGGGGAGTTTGCATTGCGAGCACATGTATCATGTGGTTTGCATACAGCAGTGGCTTCGGATGAAGAATTGGTGCCCTATTTGCAAAGCATCTGTGTTCATATAA 1611 0.4395 MDEYSGKRAIDGMVIPRKGVSHVFRDTANAKDRNGQVCSRLTCSSRVNTSKGAQIGSSEKGKSLKPSIQSSSAGKEAVGSSSRTFPKTSSPGKPLIKPRKKASSQLETDSSETSSVLDESEVSQLAPSPVKSQTGLQAEMEKTVSGNVIMEVGSSSVVSNSRSRRNFHPKSGISGQEIKNTGPVMRAGTSRYGLRNLKCNSISDVLPAGCSPSDSTLNRRKDMIKKRNCEGEGSSSARGKKISGSSLEGRNSGSRNGISISDSRISRNTPPHRDRSDSNMEPVRTRKSISGHARGRLSSQGNANPVSPNRSPVMIPSLSHSGGRNASGVSHRTSVDSSLSCPSSHSRPGTSSEELYGVMPGSPSEYGLTHSIMNLDSFRRRYNVDSIAEVLLALERIEQDVELTHEQIRLLESNLFLTGLNFYDPHRDMRLDIDNMSYEQLLALEERMGSVSTALTEEALSECLKKSFFQSSPSENAVNSCKEAKDDTKCSICQEEYTVADELGSLHCEHMYHVVCIQQWLRMKNWCPICKASVFI 536
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3248g00021 536 MobiDBLite consensus disorder prediction 43 137 - -
Vium3248g00021 536 MobiDBLite consensus disorder prediction 107 137 - -
Vium3248g00021 536 MobiDBLite consensus disorder prediction 155 184 - -
Vium3248g00021 536 ProSiteProfiles Zinc finger RING-type profile. 490 531 IPR001841 -
Vium3248g00021 536 MobiDBLite consensus disorder prediction 267 282 - -
Vium3248g00021 536 SMART ring_2 490 530 IPR001841 -
Vium3248g00021 536 MobiDBLite consensus disorder prediction 224 358 - -
Vium3248g00021 536 Pfam Ring finger domain 489 531 IPR001841 -
Vium3248g00021 536 Coils Coil 394 414 - -
Vium3248g00021 536 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 74 535 IPR045191 GO:0061630
Vium3248g00021 536 FunFam E3 ubiquitin-protein ligase arkadia 452 535 - -
Vium3248g00021 536 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 452 535 IPR013083 -
Vium3248g00021 536 MobiDBLite consensus disorder prediction 155 178 - -
Vium3248g00021 536 MobiDBLite consensus disorder prediction 43 89 - -
Vium3248g00021 536 SUPERFAMILY RING/U-box 483 535 - -
Vium3248g00021 536 MobiDBLite consensus disorder prediction 238 266 - -
Vium3248g00021 536 MobiDBLite consensus disorder prediction 292 351 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3248g00021 Vium-Chr3248 79302 84000 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3248g00021 376 535 C3H Transcription Factor Family AT2G15530 40.625 1.14e-31 127
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3248g00021 - - gmx:100787213 889.412