LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vium3246g00013	ATGGGTCAGATCCAGTATTCTGAGAAGTACTTCGATGACACTTATGAATACAGACATGTGGTTCTGCCTCCTGAAGTGGCCAAAATGCTTCCTAAGAATCGGCTTCTTTCTGAAAATGAGTGGCGTGCAATTGGGGTTCAGCAGAGCCGTGGTTGGGTTCATTACGCCATTCATCGCCCTGAGCCACACATAATGCTTTTCAGGAGGCCTTTGAATTATCAGCAGCAGCAGGAGAACCAGGCTCAGCAAAGCATGCTTGTCAAATGA	267	0.4719	MGQIQYSEKYFDDTYEYRHVVLPPEVAKMLPKNRLLSENEWRAIGVQQSRGWVHYAIHRPEPHIMLFRRPLNYQQQQENQAQQSMLVK	88

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vium3246g00013	88	FunFam	Cyclin-dependent kinases regulatory subunit	1	84	-	-
	Vium3246g00013	88	PRINTS	Cyclin-dependent kinase regulatory subunit signature	40	54	IPR000789	GO:0016538
	Vium3246g00013	88	PRINTS	Cyclin-dependent kinase regulatory subunit signature	18	32	IPR000789	GO:0016538
	Vium3246g00013	88	PRINTS	Cyclin-dependent kinase regulatory subunit signature	55	69	IPR000789	GO:0016538
	Vium3246g00013	88	PRINTS	Cyclin-dependent kinase regulatory subunit signature	3	17	IPR000789	GO:0016538
	Vium3246g00013	88	Pfam	Cyclin-dependent kinase regulatory subunit	4	70	IPR000789	GO:0016538
	Vium3246g00013	88	Gene3D	-	1	84	IPR036858	GO:0016538
	Vium3246g00013	88	PANTHER	CYCLIN-DEPENDENT KINASES REGULATORY SUBUNIT/60S RIBOSOME SUBUNIT BIOGENESIS PROTEIN NIP7	3	84	-	-
	Vium3246g00013	88	SMART	CKS_2	3	72	IPR000789	GO:0016538
	Vium3246g00013	88	ProSitePatterns	Cyclin-dependent kinases regulatory subunits signature 1.	6	24	IPR000789	GO:0016538

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Vium3246g00013	Vium-Chr3246	102321	103776	Tandem

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vium3246g00013	1	82	Core Cell Cycle Gene Families	AT2G27970	90.244	1.97e-52	156

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vium3246g00013	K02219		-	gmx:100786340	181.415

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