Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3246g00008 ATGATCATTATTTGGCTGCTCTTCACTTTATATATAAAGAACGTTCCCTCCACAACATTATATCCTTCTCTGTATGATCCAAGTCAAAAGCCAATCTTCACACGAAAACTAAGATTTGAAACCATACAGCTACCATTTTCACAGGTTTGTTGCAGGAAGATTGATTCAACAATGATGCCAAAGGCTACATCTTACTCCACAAAGGATTTTCAAGCATCTCAAATGTTTCCTGTGAATGAATATTTGGCTTCATCTTCTGTTGAACTAAGTTCTTCCTCAACTTCACACTCTTCTACCTCCCTCCTCTGCTATCTCTCTCTTCTGAAGGACAAGCTAGGTCAGCTGCAGAACCTGGTTGATGTTCTTGTCACCCCTCGACATAACCTAACTCCCATGGCAATCTCCACCATGAACGCAACACTCGAAGAAATCATAGTGGCAGCCACATCAATGAGATTTACCTGTCAGCAAATGACTCTTGGTTCCTCTTCAGGTACTAGTATTGCTAATGAATTGCACCGAAACCAGAACCAGCAACAACTTGATCATGGTAGCGTATTATCACCTCATCATCCATCAAACTTTGGCAACAACAATAGGGGTATGCTTAGTATGAGTAGCATTAACATGAGCTCTTATATGATCAGAGGGCAAAGTAAATTCCTATCTGGTATAGAAGGAGGGGCACTGGATTGGTTTGGTGAAAGATACAACAATAACAATATTGGAGATTGTAACATTAAGGATGAAGAAGCCGACAGGAACATCATGAGAGAGAGTGATATAATCGAATTGGATGCTGCTGATTTGTTGGCCAAGTACTCTTATTTTTGCCAAGTGTGTGGGAAAGGGTTCAAACGTGATGCGAATTTGAGGATGCACATGAGGGCTCATGGGGAAGAGTACAAAACAAATGCAGCCTTGAGCAACCCAATGAAAAGCAGGGAGAGTTTATTGGGTGAGGGAAGTTCCAGCAAGAAATATTCATGCCCTCAAGAAGGGTGTAGGTGGAACCAGAAACATGCAAAGTTCCAGCCATTGAAGTCAATGATCTGTGCTAAAAACCATTACAAGAGGAGCCACTGCCCCAAGATGTACGTGTGCAATAGGTGCAACCAGAAGCAGTTTTCGGTGCTTTCTGATTTGAGGACACATGAGAAGCACTGTGGGGACGCCAAGTGGCAGTGCTCCTGTGGGACAACATTTTCTAGGAAAGACAAGCTTATGGGCCATGTTGCTTTGTTCGTGGGACACACCCCAGCTATTCATGGCTTCTCGACATATGTTCGATGA 1293 0.4285 MIIIWLLFTLYIKNVPSTTLYPSLYDPSQKPIFTRKLRFETIQLPFSQVCCRKIDSTMMPKATSYSTKDFQASQMFPVNEYLASSSVELSSSSTSHSSTSLLCYLSLLKDKLGQLQNLVDVLVTPRHNLTPMAISTMNATLEEIIVAATSMRFTCQQMTLGSSSGTSIANELHRNQNQQQLDHGSVLSPHHPSNFGNNNRGMLSMSSINMSSYMIRGQSKFLSGIEGGALDWFGERYNNNNIGDCNIKDEEADRNIMRESDIIELDAADLLAKYSYFCQVCGKGFKRDANLRMHMRAHGEEYKTNAALSNPMKSRESLLGEGSSSKKYSCPQEGCRWNQKHAKFQPLKSMICAKNHYKRSHCPKMYVCNRCNQKQFSVLSDLRTHEKHCGDAKWQCSCGTTFSRKDKLMGHVALFVGHTPAIHGFSTYVR 430
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3246g00008 430 Gene3D Classic Zinc Finger 364 414 - -
Vium3246g00008 430 PANTHER PROTEIN SENSITIVE TO PROTON RHIZOTOXICITY 1 80 422 IPR044300 GO:0010044|GO:0010447
Vium3246g00008 430 FunFam Zinc finger protein 574 275 299 - -
Vium3246g00008 430 ProSitePatterns Zinc finger C2H2 type domain signature. 278 298 IPR013087 -
Vium3246g00008 430 Gene3D Classic Zinc Finger 262 335 - -
Vium3246g00008 430 ProSiteProfiles Zinc finger C2H2 type domain profile. 276 303 IPR013087 -
Vium3246g00008 430 SMART c2h2final6 276 298 IPR013087 -
Vium3246g00008 430 SMART c2h2final6 366 388 IPR013087 -
Vium3246g00008 430 SMART c2h2final6 328 361 IPR013087 -
Vium3246g00008 430 SUPERFAMILY beta-beta-alpha zinc fingers 274 301 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3246g00008 Vium-Chr3246 84735 86366 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3246g00008 63 426 C2H2 Transcription Factor Family AT5G22890 46.011 2.87e-104 312
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vium3246g00008 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3246g00008 - - vum:124833786 830.091