Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3246g00006 ATGGAGATGGAAGGGTTAGATTCTAATTCTAATTCCAATTCCTATTCTAGCTCTGCCCAGAGCAACATAGCCAAGGGCAAACGGACCAAAAGGATGAGGCTTTTGTCCCCTTCTGGTGTCGCCGTTGTTACCACCGCCGCCACCACTGGACTCACCACCACCACCACCAGTTGCTCCAGTCCTAACTCCGGTGGCTCCTCCACCACCACTTATGAGAGCGAAGAAGAAGACATGGCAAATTGTTTGATTCTCTTGGCCCAAGGAGGGGAATCTCACCCTCATCAACCTCATCATCACAAACAACGAGTTGAAGATCATAACGGTGTCAAGACAGCAAAGGGTAAAGGTAACACCATCACCACCGCCGCCGCCGCCGCAACAACCGCAGTTGACACCAAAGTTGGTTTCTTTATTTATGAGTGCAAAACGTGTAACCGAACGTTCCCTTCGTTTCAAGCACTGGGTGGACACAGGGCGAGTCACAAAAAGCCCAAACTTTCGCCTGAAGAGAAAAAACCACCACCCTCTCAATCGCCACACGTGGCTGTTACAACCTATGATCGGTTCGAAGAGGATAACGTTAAAAATGGTCCTCCGATTTCCCTTCAATTGGGTCATGGCAACAACAAGGTCAAGATTCATGAATGTTCCATCTGCGGTTCGGAATTCTCATCAGGACAAGCATTGGGTGGACACATGAGGAGGCATAGGTCATCGACAAACACCAACACTGTTGACACATCAAGTTCTAACACCGTCATCGCCGTGGCCACCACTGTTTCTCCGCCGCGGAACGTCTTGCAGTTGGATCTTAACCTCCCGGCGCCGGAGGATGATATCCGGGAGGCTAAGTTTCAATTTCCGGTAACAACTCAGATGCTGGTTGGTACTCCGGCTTTGGTAGATTGTCTTTATTAG 918 0.4967 MEMEGLDSNSNSNSYSSSAQSNIAKGKRTKRMRLLSPSGVAVVTTAATTGLTTTTTSCSSPNSGGSSTTTYESEEEDMANCLILLAQGGESHPHQPHHHKQRVEDHNGVKTAKGKGNTITTAAAAATTAVDTKVGFFIYECKTCNRTFPSFQALGGHRASHKKPKLSPEEKKPPPSQSPHVAVTTYDRFEEDNVKNGPPISLQLGHGNNKVKIHECSICGSEFSSGQALGGHMRRHRSSTNTNTVDTSSSNTVIAVATTVSPPRNVLQLDLNLPAPEDDIREAKFQFPVTTQMLVGTPALVDCLY 305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3246g00006 305 ProSiteProfiles Zinc finger C2H2 type domain profile. 214 241 IPR013087 -
Vium3246g00006 305 ProSiteProfiles Zinc finger C2H2 type domain profile. 139 166 IPR013087 -
Vium3246g00006 305 ProSitePatterns Zinc finger C2H2 type domain signature. 216 236 IPR013087 -
Vium3246g00006 305 SUPERFAMILY beta-beta-alpha zinc fingers 139 236 IPR036236 -
Vium3246g00006 305 MobiDBLite consensus disorder prediction 90 111 - -
Vium3246g00006 305 PANTHER ZINC FINGER PROTEIN ZAT5 65 287 - -
Vium3246g00006 305 ProSitePatterns Zinc finger C2H2 type domain signature. 141 161 IPR013087 -
Vium3246g00006 305 Pfam C2H2-type zinc finger 214 238 - -
Vium3246g00006 305 Pfam C2H2-type zinc finger 139 164 - -
Vium3246g00006 305 Gene3D Classic Zinc Finger 137 236 - -
Vium3246g00006 305 MobiDBLite consensus disorder prediction 1 36 - -
Vium3246g00006 305 SMART c2h2final6 214 236 IPR013087 -
Vium3246g00006 305 SMART c2h2final6 139 161 IPR013087 -
Vium3246g00006 305 MobiDBLite consensus disorder prediction 52 73 - -
Vium3246g00006 305 MobiDBLite consensus disorder prediction 1 25 - -
Vium3246g00006 305 MobiDBLite consensus disorder prediction 152 181 - -
Vium3246g00006 305 MobiDBLite consensus disorder prediction 92 111 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3246g00006 Vium-Chr3246 68762 69973 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3246g00006 18 305 C2H2 Transcription Factor Family AT2G28200 42.295 5.89e-57 183
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vium3246g00006 zf-C2H2_6 1.3e-11 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3246g00006 - - var:108346781 404.06