Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vium3246g00006 | ATGGAGATGGAAGGGTTAGATTCTAATTCTAATTCCAATTCCTATTCTAGCTCTGCCCAGAGCAACATAGCCAAGGGCAAACGGACCAAAAGGATGAGGCTTTTGTCCCCTTCTGGTGTCGCCGTTGTTACCACCGCCGCCACCACTGGACTCACCACCACCACCACCAGTTGCTCCAGTCCTAACTCCGGTGGCTCCTCCACCACCACTTATGAGAGCGAAGAAGAAGACATGGCAAATTGTTTGATTCTCTTGGCCCAAGGAGGGGAATCTCACCCTCATCAACCTCATCATCACAAACAACGAGTTGAAGATCATAACGGTGTCAAGACAGCAAAGGGTAAAGGTAACACCATCACCACCGCCGCCGCCGCCGCAACAACCGCAGTTGACACCAAAGTTGGTTTCTTTATTTATGAGTGCAAAACGTGTAACCGAACGTTCCCTTCGTTTCAAGCACTGGGTGGACACAGGGCGAGTCACAAAAAGCCCAAACTTTCGCCTGAAGAGAAAAAACCACCACCCTCTCAATCGCCACACGTGGCTGTTACAACCTATGATCGGTTCGAAGAGGATAACGTTAAAAATGGTCCTCCGATTTCCCTTCAATTGGGTCATGGCAACAACAAGGTCAAGATTCATGAATGTTCCATCTGCGGTTCGGAATTCTCATCAGGACAAGCATTGGGTGGACACATGAGGAGGCATAGGTCATCGACAAACACCAACACTGTTGACACATCAAGTTCTAACACCGTCATCGCCGTGGCCACCACTGTTTCTCCGCCGCGGAACGTCTTGCAGTTGGATCTTAACCTCCCGGCGCCGGAGGATGATATCCGGGAGGCTAAGTTTCAATTTCCGGTAACAACTCAGATGCTGGTTGGTACTCCGGCTTTGGTAGATTGTCTTTATTAG | 918 | 0.4967 | MEMEGLDSNSNSNSYSSSAQSNIAKGKRTKRMRLLSPSGVAVVTTAATTGLTTTTTSCSSPNSGGSSTTTYESEEEDMANCLILLAQGGESHPHQPHHHKQRVEDHNGVKTAKGKGNTITTAAAAATTAVDTKVGFFIYECKTCNRTFPSFQALGGHRASHKKPKLSPEEKKPPPSQSPHVAVTTYDRFEEDNVKNGPPISLQLGHGNNKVKIHECSICGSEFSSGQALGGHMRRHRSSTNTNTVDTSSSNTVIAVATTVSPPRNVLQLDLNLPAPEDDIREAKFQFPVTTQMLVGTPALVDCLY | 305 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vium3246g00006 | 305 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 214 | 241 | IPR013087 | - | |
Vium3246g00006 | 305 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 139 | 166 | IPR013087 | - | |
Vium3246g00006 | 305 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 216 | 236 | IPR013087 | - | |
Vium3246g00006 | 305 | SUPERFAMILY | beta-beta-alpha zinc fingers | 139 | 236 | IPR036236 | - | |
Vium3246g00006 | 305 | MobiDBLite | consensus disorder prediction | 90 | 111 | - | - | |
Vium3246g00006 | 305 | PANTHER | ZINC FINGER PROTEIN ZAT5 | 65 | 287 | - | - | |
Vium3246g00006 | 305 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 141 | 161 | IPR013087 | - | |
Vium3246g00006 | 305 | Pfam | C2H2-type zinc finger | 214 | 238 | - | - | |
Vium3246g00006 | 305 | Pfam | C2H2-type zinc finger | 139 | 164 | - | - | |
Vium3246g00006 | 305 | Gene3D | Classic Zinc Finger | 137 | 236 | - | - | |
Vium3246g00006 | 305 | MobiDBLite | consensus disorder prediction | 1 | 36 | - | - | |
Vium3246g00006 | 305 | SMART | c2h2final6 | 214 | 236 | IPR013087 | - | |
Vium3246g00006 | 305 | SMART | c2h2final6 | 139 | 161 | IPR013087 | - | |
Vium3246g00006 | 305 | MobiDBLite | consensus disorder prediction | 52 | 73 | - | - | |
Vium3246g00006 | 305 | MobiDBLite | consensus disorder prediction | 1 | 25 | - | - | |
Vium3246g00006 | 305 | MobiDBLite | consensus disorder prediction | 152 | 181 | - | - | |
Vium3246g00006 | 305 | MobiDBLite | consensus disorder prediction | 92 | 111 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Vium3246g00006 | Vium-Chr3246 | 68762 | 69973 | Dispersed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Vium3246g00006 | 18 | 305 | C2H2 Transcription Factor Family | AT2G28200 | 42.295 | 5.89e-57 | 183 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | C2H2 | Vium3246g00006 | zf-C2H2_6 | 1.3e-11 | CL0361 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vium3246g00006 | - | - | var:108346781 | 404.06 |