Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3246g00004 ATGGACAAAAGCTATCTTCATCAAGAGACTCTACTGCACATTGATGACTTTGAGCTACACGACTTTGATGAAGATCCTAACTTAGATCATTTGATCAATTTCATTCGTTTGGAGAAGAAAGATGCTACTTGTGACTTCAATTCTGAGCTTATCAACGAAGCATTCATTGATAACTCTTTCTTGCCACACCCTGCAATCCCATATGATCAGTGCAATAGTAATGCTATGAATGTCTATGATTCAAATTCTGCACCTAACTCCTCTTGTTTTGATGGGGAAGCCAAAGGAGGAGGAGAAGAGGAAGATGATATGGAGCACTCATATGCAACAACAAGCACAACAACAACAACACCTACTAAGTCAAAACCAAAAACTGACAGATCCAAAACTCTGATTTCTGAGAGGAGGAGAAGAGACAGAATGAAGGAAAAGCTTTATGCATTGAGATCTTTGGTTCCCTTCATAACTAAGATGGATAAGGCCTCTATAATTGGAGATGCTGTCTCATATATGCACGAGCTTCAAGCACAAGCCAACATGCTTAAGGCTGAGGTTGAAGCACTTGAAACTTCCTTACTGCTGTCTAAAAACTATCAAGGATCAGTTGAAAATCCCATGAAGGATGAATTTACCAATAACATCCTTTCAATACGCAAGAAGATAATCCAGATGGACATGTTTCAAGTGGATGCAAAAGGGTTTTATGTGAAAATAGTTTGCAACAAAGGAGAAGGGGTGGCTGCCTCATTGTACAAAGCTCTAGAGTCTCTGACAGGCTTTCATGTTCAGAATTCAAACTTATCCACAGTTGGTAACAGTTTTCAACTTACATTTTCATTGAATGTGAAAATCTCTGAGCCAGAAATTAACCTGCACAGCATGAGGATTTGGGTGTGTGAAGCTTTTGTGAAGCAAGGCTTTGAATTCATACCATTTTTAATGCTTGACTCTTTCAATCTATAA 963 0.3863 MDKSYLHQETLLHIDDFELHDFDEDPNLDHLINFIRLEKKDATCDFNSELINEAFIDNSFLPHPAIPYDQCNSNAMNVYDSNSAPNSSCFDGEAKGGGEEEDDMEHSYATTSTTTTTPTKSKPKTDRSKTLISERRRRDRMKEKLYALRSLVPFITKMDKASIIGDAVSYMHELQAQANMLKAEVEALETSLLLSKNYQGSVENPMKDEFTNNILSIRKKIIQMDMFQVDAKGFYVKIVCNKGEGVAASLYKALESLTGFHVQNSNLSTVGNSFQLTFSLNVKISEPEINLHSMRIWVCEAFVKQGFEFIPFLMLDSFNL 320
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3246g00004 320 MobiDBLite consensus disorder prediction 122 136 - -
Vium3246g00004 320 MobiDBLite consensus disorder prediction 89 136 - -
Vium3246g00004 320 Gene3D - 117 191 IPR036638 GO:0046983
Vium3246g00004 320 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 59 279 - -
Vium3246g00004 320 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 125 174 IPR011598 GO:0046983
Vium3246g00004 320 SMART finulus 131 180 IPR011598 GO:0046983
Vium3246g00004 320 Coils Coil 171 191 - -
Vium3246g00004 320 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 122 194 IPR036638 GO:0046983
Vium3246g00004 320 FunFam Basic helix-loop-helix (BHLH) DNA-binding superfamily protein 121 191 - -
Vium3246g00004 320 Pfam Helix-loop-helix DNA-binding domain 132 175 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3246g00004 Vium-Chr3246 40173 41884 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3246g00004 11 307 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G28160 47.249 3.43e-82 249
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vium3246g00004 HLH 6.1e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3246g00004 K26214 - gmx:100778649 405.216