Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3246g00002 ATGGAAACCACCGCAGAGGTTGTTTCATCTAATTGTCTTCTTGTATCAGAGTACTCTGAGTCTAACCCCACGCAACTTTCTGTTATGGAACTTGGGATTCGGAATTTTGGGTGCACGCATTACAGAAGGAGATGCAAGATCAGAGCGCCGTGCTGTGATGAGGTTTTTGACTGTAGGCATTGTCATAATGAAGCTAAGAACTCTGAGGAGGTTGATGTTGTGGATCGTCATGATGTTCCACGCCATGAAATTAAGAAGGTTATCTGCTCTTTATGTGACACAGAGCAAGATGTTCAACAATACTGCATAAACTGTGGAGTATGCATGGGCAAGTATTTTTGTGATATATGCAAATTCTTTGATGATGATACTTCAAAGAACCAATACCACTGTGAAGAATGTGGCATTTGCAGAACTGGAGGCAAGGATAACTTTTTCCACTGCAAGAGATGTGGATGTTGCTACTCCAAGGTAATGGAAAAGGGTCACCGTTGTGTAGAAGGAGCAATGCATCACAATTGCCCTGTCTGCTTTGAGTATCTATTTGATACAGTAAGAGAAATCAGTGTCTTGCCTTGCGCGCACACTATACATTTAGACTGTGTCAAAGAGATGGAAAAACATCATAGGTACTCATGTCCTGTGTGCTCAAAATCCATCTGTGACATGTCAAGTCTGTGGAAGAAGCTTGACAAAGTGGTTGCCTTAACTCCAATGCCTGAAACCTTAAAAAACAAGATGGTGTGGATTCTTTGCAATGATTGTGGAGTGAAATCTCATGTTCAATTCCATATTGTGGCACATAAGTGTTTAAGTTGCAATTCATACAACACAAGACAGATACAGGGAACACCTGCTACACCAGGCTCGTCTAGAGTGACAGAAATGGTGATATGA 897 0.4147 METTAEVVSSNCLLVSEYSESNPTQLSVMELGIRNFGCTHYRRRCKIRAPCCDEVFDCRHCHNEAKNSEEVDVVDRHDVPRHEIKKVICSLCDTEQDVQQYCINCGVCMGKYFCDICKFFDDDTSKNQYHCEECGICRTGGKDNFFHCKRCGCCYSKVMEKGHRCVEGAMHHNCPVCFEYLFDTVREISVLPCAHTIHLDCVKEMEKHHRYSCPVCSKSICDMSSLWKKLDKVVALTPMPETLKNKMVWILCNDCGVKSHVQFHIVAHKCLSCNSYNTRQIQGTPATPGSSRVTEMVI 298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3246g00002 298 FunFam RING finger and CHY zinc finger domain-containing protein 1 245 288 - -
Vium3246g00002 298 ProSiteProfiles Zinc finger CHY-type profile. 31 107 IPR008913 GO:0008270
Vium3246g00002 298 Pfam RING-type zinc-finger 174 214 IPR027370 -
Vium3246g00002 298 SUPERFAMILY CHY zinc finger-like 35 109 IPR037274 GO:0008270
Vium3246g00002 298 SUPERFAMILY Zinc hairpin stack 110 167 IPR037275 -
Vium3246g00002 298 Pfam Zinc-ribbon 221 279 IPR039512 -
Vium3246g00002 298 ProSiteProfiles Zinc finger CTCHY-type profile. 109 173 IPR017921 -
Vium3246g00002 298 ProSiteProfiles Zinc finger RING-type profile. 174 217 IPR001841 -
Vium3246g00002 298 PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 32 282 - -
Vium3246g00002 298 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 169 236 IPR013083 -
Vium3246g00002 298 SUPERFAMILY RING/U-box 173 220 - -
Vium3246g00002 298 Pfam CHY zinc finger 38 119 IPR008913 GO:0008270
Vium3246g00002 298 Gene3D - 245 286 - -
Vium3246g00002 298 SMART ring_2 174 216 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3246g00002 Vium-Chr3246 21828 24619 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3246g00002 36 288 C2H2 Transcription Factor Family AT3G18290 40.541 2.60e-55 191
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3246g00002 K10144 - gmx:100812709 584.334