Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3245g00025 ATGTCTGTGCAGGATGAAAATTCTGATACAAAAGAAGTAATATGTCCCCAGAGAAGGCTAACAAATCTGATGCATCATGGTGGGAACAAGTTCTGCGCTGATTGCGGAACTCCAGAGCCAAAATGGGTATCTTCGAGTCTTGGAGTATTTATTTGCATCAAGTGTTCTGGCATACACAGAAGTCTAGGAGTCCACATATCAAAGGTTCTATCGTTGAAGCTAGATGAATGGACAGATGAACAAGTTGATGCATTAGCAAAATTAGGAGGAAATACACTATTAAACAAGAAGTATGAAGCTTGCCTCCCAAGTAACATGAGAAAACCAAAACCACATTCTTCCATTGAAGAGCGCTCTGAATATATTCGGAGAAAATATGAGTTCCAACAGTTTATGGGGTGTGATGACAATGTGGCAGGCCCCATTATCCCATCTCAAGGAAGAAGTGTATCACTTGCTCAGTGCAGCTCTTCATACTATCATGCTCTTATGGACAAAAAACCATCTGAAAGATTTCCAGGCAAAACTCGAATTGGGAATGCATTCCGAAATAGTTGGGGAAGAAAAGATTCTGAGCACAAGTCAAAGAAAAGTACCTCATTGGCAGGTATGGTTGAATTTGTTGGGTTGATTAAGGTTAATGTTGTTAGAGGCACTCACCTAGCTGTTCGAGACGTAATGACTAGTGACCCTTATGTCATCCTTTCTTTGGGACACCAATCAGTAAAAACACGAGTCATAAAGAACAATTTAAATCCAGTGTGGAATGAAAGTCTAATGCTTTCAATTCCAGAGAACATTCCTCCTCTAAAAGTGGTAAGTTCGTTCATTTTCTCACTTTCTGCTAATCATAAATGGTTGCTATTTGTGTTTGTGCTCTTGTACCATAATCATATTTGTACTAGTAAAACAGTAACAATCTCATGA 927 0.3905 MSVQDENSDTKEVICPQRRLTNLMHHGGNKFCADCGTPEPKWVSSSLGVFICIKCSGIHRSLGVHISKVLSLKLDEWTDEQVDALAKLGGNTLLNKKYEACLPSNMRKPKPHSSIEERSEYIRRKYEFQQFMGCDDNVAGPIIPSQGRSVSLAQCSSSYYHALMDKKPSERFPGKTRIGNAFRNSWGRKDSEHKSKKSTSLAGMVEFVGLIKVNVVRGTHLAVRDVMTSDPYVILSLGHQSVKTRVIKNNLNPVWNESLMLSIPENIPPLKVVSSFIFSLSANHKWLLFVFVLLYHNHICTSKTVTIS 308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3245g00025 308 CDD ArfGap 20 126 - -
Vium3245g00025 308 Pfam Putative GTPase activating protein for Arf 18 132 IPR001164 GO:0005096
Vium3245g00025 308 SUPERFAMILY ArfGap/RecO-like zinc finger 17 132 IPR037278 -
Vium3245g00025 308 SMART C2_3c 210 308 IPR000008 -
Vium3245g00025 308 ProSiteProfiles ARF GTPase-activating proteins domain profile. 17 139 IPR001164 GO:0005096
Vium3245g00025 308 SMART arf_gap_3 17 139 IPR001164 GO:0005096
Vium3245g00025 308 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 206 272 IPR035892 -
Vium3245g00025 308 ProSiteProfiles C2 domain profile. 191 308 IPR000008 -
Vium3245g00025 308 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD12 14 272 IPR044518 GO:0005096|GO:0005543
Vium3245g00025 308 Pfam C2 domain 210 272 IPR000008 -
Vium3245g00025 308 Gene3D C2 domain 192 281 IPR035892 -
Vium3245g00025 308 PRINTS HIV Rev interacting protein signature 29 48 IPR001164 GO:0005096
Vium3245g00025 308 PRINTS HIV Rev interacting protein signature 48 65 IPR001164 GO:0005096
Vium3245g00025 308 PRINTS HIV Rev interacting protein signature 69 90 IPR001164 GO:0005096
Vium3245g00025 308 FunFam stromal membrane-associated protein 1 isoform X1 2 137 - -
Vium3245g00025 308 Gene3D Arf GTPase activating protein 2 138 IPR038508 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3245g00025 Vium-Chr3245 233414 237730 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3245g00025 16 240 C2H2 Transcription Factor Family AT3G07940 61.233 3.32e-93 276
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3245g00025 K12486 - gmx:100789552 488.804