Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3245g00024 ATGTCTGTGCAGGATGAAAATTCTGATACAAAAGAAGTAATATGTCCCCAGAGAAGGCTAACAAATCTGATGCATCATGGTGGGAACAAGTTCTGCGCTGATTGCGGAACTCCAGAGCCAAAATGGGTATCTTCGAGTCTTGGAGTATTTATTTGCATCAAGTGTTCTGGCATACACAGAAGTCTAGGAGTCCACATATCAAAGGTTCTATCGTTGAAGCTAGATGAATGGACAGATGAACAAGTTGATGCATTAGCAAAATTAGGAGGAAATACACTATTAAACAAGAAGTATGAAGCTTGCCTCCCAAGTAACATGAGAAAACCAAAACCACATTCTTCCATTGAAGAGCGCTCTGAATATATTCGGAGAAAATATGAGTTCCAACAGTTTATGGGGTGTGATGACAATGTGGCAGGCCCCATTATCCCATCTCAAGGAAGAAGTGTATCACTTGCTCAGTGCAGCTCTTCATACTATCATGCTCTTATGGACAAAAAACCATCTGAAAGATTTCCAGGCAAAACTCGAATTGGGAATGCATTCCGAAATAGTTGGGGAAGAAAAGATTCTGAGCACAAGTCAAAGAAAAGTACCTCATTGGCAGGTATGGTTGAATTTGTTGGGTTGATTAAGGTTAATGTTGTTAGAGGCACTCACCTAGCTGTTCGAGACGTAATGACTAGTGACCCTTATGTCATCCTTTCTTTGGGACACCAATCAGTAAAAACACGAGTCATAAAGAACAATTTAAATCCAGTGTGGAATGAAAGTCTAATGCTTTCAATTCCAGAGAACATTCCTCCTCTAAAAGTGCTTGTGTATGACAAGGATACATTTTCAACTGATGATTTTATGGGAGAGGCTGAAATAGACATTCAACCTCTAGTTATAGCTGCAAAGGCCTATGAGAAATCAAACATCAACGAATCCATGCAACTTGGTAAATTTGTGGCAAGCAAGGACAACACCCTTGTTAGAGATGGCATCATATCCCTTGATGAAGGCAAGATCAAACAGGAGATCTCAGTGAGACTGCAGAACATTGAGAGAGGTGAACTTGAGCTTGAGCTTGAGTGTGTTCCTCTTACTCAATAG 1098 0.4035 MSVQDENSDTKEVICPQRRLTNLMHHGGNKFCADCGTPEPKWVSSSLGVFICIKCSGIHRSLGVHISKVLSLKLDEWTDEQVDALAKLGGNTLLNKKYEACLPSNMRKPKPHSSIEERSEYIRRKYEFQQFMGCDDNVAGPIIPSQGRSVSLAQCSSSYYHALMDKKPSERFPGKTRIGNAFRNSWGRKDSEHKSKKSTSLAGMVEFVGLIKVNVVRGTHLAVRDVMTSDPYVILSLGHQSVKTRVIKNNLNPVWNESLMLSIPENIPPLKVLVYDKDTFSTDDFMGEAEIDIQPLVIAAKAYEKSNINESMQLGKFVASKDNTLVRDGIISLDEGKIKQEISVRLQNIERGELELELECVPLTQ 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3245g00024 365 CDD ArfGap 20 126 - -
Vium3245g00024 365 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 206 300 IPR035892 -
Vium3245g00024 365 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD12 14 365 IPR044518 GO:0005096|GO:0005543
Vium3245g00024 365 Pfam Putative GTPase activating protein for Arf 18 132 IPR001164 GO:0005096
Vium3245g00024 365 SUPERFAMILY ArfGap/RecO-like zinc finger 17 132 IPR037278 -
Vium3245g00024 365 ProSiteProfiles C2 domain profile. 191 307 IPR000008 -
Vium3245g00024 365 ProSiteProfiles ARF GTPase-activating proteins domain profile. 17 139 IPR001164 GO:0005096
Vium3245g00024 365 Pfam C2 domain 210 296 IPR000008 -
Vium3245g00024 365 SMART arf_gap_3 17 139 IPR001164 GO:0005096
Vium3245g00024 365 CDD C2_ArfGAP 208 352 - -
Vium3245g00024 365 FunFam ADP-ribosylation factor GTPase-activating protein AGD12 207 365 - -
Vium3245g00024 365 PRINTS HIV Rev interacting protein signature 48 65 IPR001164 GO:0005096
Vium3245g00024 365 PRINTS HIV Rev interacting protein signature 69 90 IPR001164 GO:0005096
Vium3245g00024 365 PRINTS HIV Rev interacting protein signature 29 48 IPR001164 GO:0005096
Vium3245g00024 365 FunFam stromal membrane-associated protein 1 isoform X1 2 137 - -
Vium3245g00024 365 Gene3D Arf GTPase activating protein 2 138 IPR038508 -
Vium3245g00024 365 Gene3D C2 domain 208 365 IPR035892 -
Vium3245g00024 365 SMART C2_3c 210 305 IPR000008 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3245g00024 Vium-Chr3245 224273 233059 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3245g00024 17 365 C2H2 Transcription Factor Family AT4G21160 47.278 2.02e-118 345