Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3245g00013 ATGGGGGAAGAGGTGAAGACGGGCGAGTACGACGAAGAGCGGGTCATGGAGTGGGAACTGGGTCTCCCCACCGCCAACGATCTCACGCCTCTCTCTCAGCCGCTGATTCCGCCGGAGCTCGCCACAGCATTCAGCATATGTCCGGAGCCCCACCGCACCGCCCTAGACGTCAACCGGGCCTCACGCAACACGCTCTCCACGCTGCGCGGCGGTGGGAGCGTGCACCAGGCCTTCTCCTCCTCCAACAACCACCAACACCACGAGGAGGACGAGGAGGAGGAGGACGAGGACACCGATCGCGACGGCTCGGGGTCGGATTCTCGGAAGCATCGGAAGATCGAGTGCGTGGCGGAGGAGGCGGACTCGGCGGTGCGGACGGAGAACTCGGCGGAGCGGACAGCAGTGAAGCGGCCGCGGCTGGTGTGGACCCCGCAGCTGCACAAGCGGTTCGTCGACGTGGTGGCTCACCTTGGGATCAAGAACGCGGTGCCGAAGACGATTATGCAGTTGATGAACGTGGAAGGGTTGACCCGCGAGAATGTGGCGAGTCATCTTCAGAAGTATCGGCTTTACCTGAAGCGGATGCAGGGTCTCTCCAACGAAGGTCCTTCTTCATCGGATCAGTTATTCGCTTCCACACCCGTGCCTCAGAGTTTGCACGACTCTGCTCCTCCCAGTGCCCATTCCCATGGTCAATCCCATGGCCATGCCAATGCTCATCTTCCTGTTCCCATGATGTCCATGCCCTATCCCCCTCCCATGATGTCCATGCTTGTCCTCGGCACGCCCCATGCCCATGGCCACATGGGAATCCCTATGCCTACTTCATCCGCCACCTCAGCTTACCATCCTTACAACATGCTGCACCAAAGGGATTGGACTCACCTTGCTCCCAATGATAAATGA 906 0.6026 MGEEVKTGEYDEERVMEWELGLPTANDLTPLSQPLIPPELATAFSICPEPHRTALDVNRASRNTLSTLRGGGSVHQAFSSSNNHQHHEEDEEEEDEDTDRDGSGSDSRKHRKIECVAEEADSAVRTENSAERTAVKRPRLVWTPQLHKRFVDVVAHLGIKNAVPKTIMQLMNVEGLTRENVASHLQKYRLYLKRMQGLSNEGPSSSDQLFASTPVPQSLHDSAPPSAHSHGQSHGHANAHLPVPMMSMPYPPPMMSMLVLGTPHAHGHMGIPMPTSSATSAYHPYNMLHQRDWTHLAPNDK 301
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3245g00013 301 MobiDBLite consensus disorder prediction 198 233 - -
Vium3245g00013 301 SUPERFAMILY Homeodomain-like 135 194 IPR009057 -
Vium3245g00013 301 MobiDBLite consensus disorder prediction 198 240 - -
Vium3245g00013 301 Gene3D - 133 196 - -
Vium3245g00013 301 MobiDBLite consensus disorder prediction 66 81 - -
Vium3245g00013 301 FunFam Two-component response regulator 133 196 - -
Vium3245g00013 301 Pfam Myb-like DNA-binding domain 141 189 IPR001005 -
Vium3245g00013 301 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 134 193 IPR017930 -
Vium3245g00013 301 PANTHER HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 13 274 IPR044841 GO:0003700|GO:0006355
Vium3245g00013 301 MobiDBLite consensus disorder prediction 66 112 - -
Vium3245g00013 301 NCBIfam myb-like DNA-binding domain, SHAQKYF class 138 190 IPR006447 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3245g00013 Vium-Chr3245 94858 97395 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3245g00013 1 221 G2-like Transcription Factor Family AT3G46640 61.317 2.16e-86 260
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Vium3245g00013 Myb_DNA-binding 1.2e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3245g00013 - - aprc:113858844 484.182